BAC Information

Click to search

BAC

Clone NameMSMg01-470A20
Chromosome1 (Build37)
Map Location 71,753,633 - 71,754,194
singlet/doubletsinglet
Overlap genenone
Upstream geneSpag16, A830006F12Rik, LOC100043210, EG667884, EG666083, LOC100042804, LOC100042809, Bard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814
Downstream geneGabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470A20.T7 (MSMg01no470_a20.b1)MSMg01-470A20.TJ (MSMg01no470_a20.g1)
ACCAG553144AG553145
length785755
length of high quality
(start - end)
324 (73 - 396)575 (71 - 645)
definitionCHROMAT_FILE: MSMg01no470_a20.b1 PHD_FILE: MSMg01no470_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:50 2005CHROMAT_FILE: MSMg01no470_a20.g1 PHD_FILE: MSMg01no470_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTTCCCTGACCCTGTGCAAAGATGCTAGGCATGACGGCTCACA
CTTGTAAACCTGCCGGTGGGGAGGCAGAAACAGGAAGATCACTAGGGGTT
ACTAGCCAGCCAGGCTAGCCTAATTAGTAACCTTCGGTACAATGAAAGAC
CTTGTCTCAGAAGAGGTAGACATCTCCCCGATGACAATCAGGGGTGTCTT
CTGGCCTCTGTATGCACATGAACATGTGCAAAGAAAGGGTATATTTATCC
CACTTGTTTCAGCTCATTTTCTCTTTTTAAAAAAACTAATCTGTTGGTTT
TTTTTTTGTTTGTTTGTTTGTTTTTTTGGTGTGAGTGTGTGTGTGTGCCT
CCCNCCCCTCCCCCCCCCCCCCCCCCTCTCTCCCTTCCCTTTCCCCCCCT
TCCCCCCCCCTCTTCCCCTTTCTTCCCCCCCCCCCCTCTCCCTCCTTTCT
CTCCTCTCCCCCCCCTTCTCCTCCCCCCCCCTCTCCCCCCCTTCTCNCCC
TTCTTCCTCTTTTCCTCCTCTTTCCCCTCTCCCCCCTTCTCCTCCCCCTT
TCTCCCCTCCCCCTCTCCTCCCTTTCCCTCTTTCCCCCCCCTCCTCTCCC
CTTTTCTCCCCTCCCCCCCTCTTTCCCCCTTCCCTTTCTTTCTTCCCCCT
CTNTTTCCTCCCTCTTCTTTCCCCCCTCTCCCCCCCTCTTTCTCCCTTCC
TCTTCCTTTCCTCTCTCTCTTTTTCCCCCTCTCCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGACGTCCCGCCTTCATTTAGAATATCT
CTGCACAATTATCAAAATCGAGACCACAGCACAACACTTACAAAGAGACA
AGAGCTCCACAACCTCTTCATCCCAAGTGGACACACGCTGTACTGACTAA
GCTCCCACAGTCCGTGACAATGCCCTGCCGCTCACTGACTTTGCCCAAGA
GAGTGTGGACTGTGTGTCAACATTTAAGGTGGCTTTGTGATAATGGGTGA
TAATTATATTACTGAATGTATTCTCTGGCTGTGACATGCATGGCTTAGTG
CATAAAACTAATCATTGCCAAGCCGGATGATCCCAAATCCATGCCAGAGC
TCACATGGCGGAAGGCAGCCACCACGAGCTGTTCTCTGTCCACAAACACG
CTGTGCGCACTCTAAAACCGATTCTAAACAAAACAAAACAAAACAAAACA
AAACAATAGACTTTAATGGCTTGGTGTTTCCAAACCAGATAATTTTGCCC
TAGAGATGGTTGAAAAAATCTTTTCAGATACTTTCTATGTATTTCTATCT
GTGTTAGATTGATACAGTCCTATTTTGCTTCTAATACAAAAAGATAATGC
TCTCTGAATTCTGAGAGGAGCAAGAAGCATAGTTTTGTGGGGCTCCATAA
GGAAACAGCCACCATAAGGATGGCCTCCTCTGACAGTGGGCAGTGCCGTA
GCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_a20.g1 MSMg01no470_a20.g1 CHROMAT_FILE:
MSMg01no470_a20.g1 PHD_FILE: MSMg01no470_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:50 2005
         (575 letters)



>mm_chr1_71753433_71754407
          Length = 975

 Score =  988 bits (511), Expect = 0.0
 Identities = 551/567 (97%), Gaps = 6/567 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgacgtcccgccttcatttagaatatctctgcacaattatcaaaatcgagaccacagc 60
           ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 catgacgtcccaccttcatttagaatatctctgcacaattagcaaaatcgagaccacagc 260

                                                                       
Query: 61  acaacacttacaaagagacaagagctccacaacctcttcatcccaagtggacacacgctg 120
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 261 acaacacttacaaagagacaagagctccacaacctctttgtcccaagtggacacacgctg 320

                                                                       
Query: 121 tactgactaagctcccacagtccgtgacaatgccctgccgctcactgactttgcccaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgactaagctcccacagtccgtgacaatgccctgccgctcactgactttgcccaaga 380

                                                                       
Query: 181 gagtgtggactgtgtgtcaacatttaaggtggctttgtgataatgggtgataattatatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgtggactgtgtgtcaacatttaaggtggctttgtgataatgggtgataattatatt 440

                                                                       
Query: 241 actgaatgtattctctggctgtgacatgcatggcttagtgcataaaactaatcattgcca 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actgaatgtagtctctggctgtgacatgcatggcttagtgcataaaactaatcattgcca 500

                                                                       
Query: 301 agccggatgatcccaaatccatgccagagctcacatggcggaaggcagccaccacgagct 360
           |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 agcctgatgatcccaaatccatgccagagctcacatggtggaaggcagccaccacgagct 560

                                                                       
Query: 361 gttctctgtccacaaacacgctgtgcgcactctaaaaccgattctaaacaaaacaaaaca 420
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 561 gttctctgtccacaaacacgctgtgcacactctaaacccgattctaaacaaaacaaaaca 620

                                                                       
Query: 421 aaacaaaacaaaacaatagactttaatggcttggtgtttccaaaccagataattttgccc 480
           |||||||||||     ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaaaacaa-----tagactttaatggcttggtgtttccaaaccagataattttgccc 675

                                                                       
Query: 481 tagagatggttgaaaaaa-tcttttcagatactttctatgtatttctatctgtgttagat 539
           |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 676 tagagatggttgaaaaaaatcttttcagatactttctatgtagttctatctgtgttagat 735

                                      
Query: 540 tgatacagtcctattttgcttctaata 566
           |||||||||||||||||||||||||||
Sbjct: 736 tgatacagtcctattttgcttctaata 762


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)