BAC Information

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BAC

Clone NameMSMg01-470C08
Chromosome1 (Build37)
Map Location 30,882,749 - 30,882,849
singlet/doubletsinglet
Overlap genePhf3
Upstream geneLOC665944, EG624138, LOC100040699
Downstream geneEG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470C08.T7 (MSMg01no470_c08.b1)MSMg01-470C08.TJ (MSMg01no470_c08.g1)
ACCAG553216AG553217
length745786
length of high quality
(start - end)
105 (132 - 236)308 (77 - 384)
definitionCHROMAT_FILE: MSMg01no470_c08.b1 PHD_FILE: MSMg01no470_c08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:57 2005CHROMAT_FILE: MSMg01no470_c08.g1 PHD_FILE: MSMg01no470_c08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTTATXXXXXXXXXXXXXXXXXXXXXXXXXATATTTCGAAACACCGNG
GAATTCTTTCATGTTTCCCACTAACTCTTCCCTTGCTTCATGCAAAGTGT
ACATGTTGCTATTTCCTGAAGTCAACTGCCTAGTATAAACTGCTTTGAGA
TTCAGAAGGAAAATGAGTGGTCCCTTCCTTCTCTTCTACAACCACAGCTG
CACTGACTGAATTCAAGTCAAGTTTGCATTGGTTTCAGTCTTAAATGACA
GACCATATTTTAGTGTAAAAGCATTCTCAAACATCCATTTGATGCAACCA
AAACCGCTCACTGATCTATGATCTTTTTTTTTATCACGAAATCATCCCTC
ATTTAAAGCTTACTTTGTTCTCACACTGAATTGTTGACACGCTTTGAAAA
CCAAATCTGCCATCTACAAATGCCATTTTAGTACTTTAGAACCATGTTTA
CTTGCACATACTTCCTAACAAACCCCAAAAAACAGCACCAAACACCCATG
TCCTGTGGCCAGTAGCGCCGTTGGCGCTACTCTAATATAGCCCATTACTT
GTAACTGCTAACACCAATTCCCACTTAGGACCCTCCACCACCCCCGATCT
ACCATAAATGCTTGAACTCTCCTTTATACCATTCACCACGGCTACTCCAC
ACCGGCCGTAACACCGTCCTTTTCTGCCTCCTTTCACCCCTGTACCCCTC
CTCAACACTCGCCATCTACAGTACGCATCTATTTTTCACGCCCCC
CTCGATGATATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCCTCTGACTCAGGCATCCAGG
AATGGGCTCAGCTCATTGGTTTGCTTCTTCCAATATTTGCAATTTTTTTT
CTTTTTTGAACATGTGGTGTTAAGGAACTGTGTTTGGGTAGGAATCATTC
TGAGTAGACCAAAATAGTATTTAACTAGTTCTATCATTTGCAAAATGGAG
AGAAGTTACTCCTACATTTACCGGTTAAGTTCACAACTTTATGGGTTTAT
ACTGATTAAGTTCAAACTTCTTGATTTTCCTAATCAAGTTCTCCAGAACT
CTTCCCTCTTGTCTAATGATGCAATATGCTGAATCCACAGATGCACTTTC
AACAAAATTTAAAATATTGTTTTCACATCAGGTAAACTGGATCCAGTACC
TAAATCCACGCCCGCCATGATTGACAAAATGGGTAAGCCTTTGGAACACA
TCACTGATTTGAACAAGATTCAGTAATGACTTTCTAATATGCCTTATTCC
CGATTGATTCGAGGCGATGCTCCCTATTATGTCCCACCCTCGCCTATCTC
CCATATTTATCCCCGAATTATGCTTGCGCCCTTTCCCCACTTGTCCCAAT
CCTTTTTTTCCCACACAATGTGGTCATCATCGTTCTCTTTTTTTTTTGGT
CTCTTTTCTATTTTTCGCTAATACCCATACTGTTATTCTCTGTCTGGCTC
CTACTATCTCTTCTTGCTTACTTCTCCTCTATCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_c08.b1 MSMg01no470_c08.b1 CHROMAT_FILE:
MSMg01no470_c08.b1 PHD_FILE: MSMg01no470_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:57 2005
         (105 letters)



>mm_chr1_30882549_30883049
          Length = 501

 Score =  184 bits (95), Expect = 1e-51
 Identities = 101/105 (96%), Gaps = 4/105 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtataaactgctttgagattcagaaggaaaatgagtggtcccttccttctcttctacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtataaactgctttgagattcagaaggaaaatgagtggtcccttccttctcttctacaa 260

                                                        
Query: 61  ccacagctgcactgactgaattcaagtcaagtttgcattggtttc 105
           |||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 261 ccacagctgcactgact----tcaagtcaagtttgcattggtttc 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 3
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 501
Length adjustment: 8
Effective length of query: 97
Effective length of database: 493
Effective search space:    47821
Effective search space used:    47821
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)