BAC Information

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BAC

Clone NameMSMg01-470D14
Chromosome1 (Build37)
Map Location 121,858,509 - 122,066,565
singlet/doubletdoublet
Overlap geneGm101, Sctr, Tmem37, Dbi, 3110009E18Rik
Upstream geneGli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177
Downstream geneSteap3, C1ql2, Marco, En1, AI848258
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470D14.T7 (MSMg01no470_d14.b1)MSMg01-470D14.TJ (MSMg01no470_d14.g1)
ACCAG553276AG553277
length753752
length of high quality
(start - end)
594 (44 - 637)543 (75 - 617)
definitionCHROMAT_FILE: MSMg01no470_d14.b1 PHD_FILE: MSMg01no470_d14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:03 2005CHROMAT_FILE: MSMg01no470_d14.g1 PHD_FILE: MSMg01no470_d14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,066,098 - 122,066,565)(121,858,509 - 121,859,051)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCGGCTGGTTACCCGGCTATTCTGGTGCCATGTATGGGTGTGTACGTGA
GTGTGCGGGTGCCCGGGTAATGCAGGCCAGGAGTCAATGCTAGGTTGACT
TCCTCAATCTCTACTCCTCCTTATTTCTTACAAAAGGGTCTTTCACTGAC
TAGCTGCACTCGCCGGCTGTGAGCTCCGGGATCTGCCTGTCTCTCTTTCT
CCGATGCTGATTGCATGTTTGCCACCACACCTGGCTTCTATGTGAGTATT
GGGGACCTGAGCACTGCTCTTTAGGCTTACAAGACAAACACTTTACTGAT
TAAACAATATCCCAACCCCAGTCTACCCTATTTCTAGAATACATCTGAGA
CAGACTCAACAGAAAGGTCTCTCCTCTCTCCAAACAGAAGTCCCATATGC
CAGACGCCATATCCCACGGCTCAGGAACTTCACTCACTACAGACAAAGAG
CCTTGGACTCCAGAGCGCATTTACTGAGAAGATACATTGTAATGCTTTAT
TAAAAGTTACTTTAGAACACAGAGACTAAATACAAAGTTCTCCAAGCACA
TAAAGAGCGAAAAGTAGAAAGTCTCCTGTCCCTTATCCCTGGCTATGCCA
CTCTCCTCTGCAGAGCCGATGCCTTCATGCGGGCTTCCCGACCTCACTGC
TGCATGTGCCATGGNTGCGGAGATGCCCCCGCACATCCTGCTGTGCCAAC
AGA
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAATCCACAGGGCAGCTGCACTGCAAG
GGGATCACATAGCTTTTGCTGCAAAACAAGCACAAGAAGGGAATGGAGCA
CACCATTTTCCTTAACTTTCTTAGAATGAGCCTAGAAAGGAGTAGAGACT
CAGGAAGTACAGCTAGCAGCAATAAGTGTCATCCGACCCCAACTGACCCC
TCCTGTCTCTCACCAACAAAAAGATTTGTTTTAAAATAGGCTCTCACGTA
GCCTGGCCTGGCATCCAGTTTGTTATGTGGTCAAGTGTCTGAGTTCAGTT
TCCAGTTGCTGTGACAAAATACCCTGACAGAAGCAACTTAAGGGGGAAAG
GGTTTGGTTCACAATGGCAGGTCGTTGCCATTGCTGTAGAAAAACTGAGG
CAGCAAGAACTTGAAGCAGCTACCTTCACTAAGAGCAGAGAGCAACGAAG
TAATATGTGCTTGCTTGTGGTGAGCTCTCTTGCTCCCTCTTACACAGTTC
AGAATCCCATGCCAAGGGAATGGCGCCACCCAGAGTGTGCCAGTCTTCCC
ATATCCATTAATGTAATCAAGATAATCTCTCATAGACACACCTCCTCCTC
TGCCCTGTCTTTAAGAGGATGCCCCCTCACCCCCAATACACCCCTACTTC
CTGTCAGGCCTCCCACCTCCCTGCGGCCCCAAGTCTCTCAAGGGTCAGGC
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_d14.b1 MSMg01no470_d14.b1 CHROMAT_FILE:
MSMg01no470_d14.b1 PHD_FILE: MSMg01no470_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:03 2005
         (594 letters)



>mm_chr1_122065572_122066565
          Length = 994

 Score =  859 bits (444), Expect = 0.0
 Identities = 462/468 (98%)
 Strand = Plus / Minus

                                                                       
Query: 125 tccttatttcttacaaaagggtctttcactgactagctgcactcgccggctgtgagctcc 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 994 tccttatttcttacaaaagggtctttcactgactagccgcactcgccggctgtgagctcc 935

                                                                       
Query: 185 gggatctgcctgtctctctttctccgatgctgattgcatgtttgccaccacacctggctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 gggatctgcctgtctctctttctccgatgctgattgcatgtttgccaccacacctggctt 875

                                                                       
Query: 245 ctatgtgagtattggggacctgagcactgctctttaggcttacaagacaaacactttact 304
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||
Sbjct: 874 ctatgtgagtattggggacctgagcactgctccccaggcttacaagacaaacactttact 815

                                                                       
Query: 305 gattaaacaatatcccaaccccagtctaccctatttctagaatacatctgagacagactc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 gattaaacaatatcccaaccccagtctaccctatttctagaatacatctgagacagactc 755

                                                                       
Query: 365 aacagaaaggtctctcctctctccaaacagaagtcccatatgccagacgccatatcccac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 aacagaaaggtctctcctctctccaaacagaagtcccatatgccagacgccatatcccac 695

                                                                       
Query: 425 ggctcaggaacttcactcactacagacaaagagccttggactccagagcgcatttactga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 694 ggctcaggaacttcactcactacagacaaagagccttggactccagagcacatttactga 635

                                                                       
Query: 485 gaagatacattgtaatgctttattaaaagttactttagaacacagagactaaatacaaag 544
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaagataaattgtaatgctttattaaaagttactttagaacacagagactaaatacaaag 575

                                                           
Query: 545 ttctccaagcacataaagagcgaaaagtagaaagtctcctgtccctta 592
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttctccaagcacataaagagcgaaaagtagaaagtctcctgtccctta 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no470_d14.g1 MSMg01no470_d14.g1 CHROMAT_FILE:
MSMg01no470_d14.g1 PHD_FILE: MSMg01no470_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:04 2005
         (543 letters)



>mm_chr1_121858309_121859251
          Length = 943

 Score = 1019 bits (527), Expect = 0.0
 Identities = 539/543 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatccacagggcagctgcactgcaaggggatcacatagcttttgctgcaaaacaagcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatccacagggcagctgcactgcaaggggatcacatagcttttgctgcaaaacaagcaca 260

                                                                       
Query: 61  agaagggaatggagcacaccattttccttaactttcttagaatgagcctagaaaggagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaagggaatggagcacaccattttccttaactttcttagaatgagcctagaaaggagta 320

                                                                       
Query: 121 gagactcaggaagtacagctagcagcaataagtgtcatccgaccccaactgacccctcct 180
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagactcaggaagcacagctagcagcaataagtgtcatccgaccccaactgacccctcct 380

                                                                       
Query: 181 gtctctcaccaacaaaaagatttgttttaaaataggctctcacgtagcctggcctggcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtctctcaccaacaaaaagatttgttttaaaataggctctcacgtagcctggcctggcat 440

                                                                       
Query: 241 ccagtttgttatgtggtcaagtgtctgagttcagtttccagttgctgtgacaaaataccc 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccagtttgctatgtggtcaagtgtctgagttcagtttccagttgctgtgacaaaataccc 500

                                                                       
Query: 301 tgacagaagcaacttaagggggaaagggtttggttcacaatggcaggtcgttgccattgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacagaagcaacttaagggggaaagggtttggttcacaatggcaggtcgttgccattgc 560

                                                                       
Query: 361 tgtagaaaaactgaggcagcaagaacttgaagcagctaccttcactaagagcagagagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtagaaaaactgaggcagcaagaacttgaagcagctaccttcactaagagcagagagca 620

                                                                       
Query: 421 acgaagtaatatgtgcttgcttgtggtgagctctcttgctccctcttacacagttcagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acgaagtaatatgtgcttgcttgtggtgagctctcttgctccctcttacacagttcagaa 680

                                                                       
Query: 481 tcccatgccaagggaatggcgccacccagagtgtgccagtcttcccatatccattaatgt 540
           ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct: 681 tcccatgccaagggaatggcgccacccagagtgggccagtcttcccatattcattaatgt 740

              
Query: 541 aat 543
           |||
Sbjct: 741 aat 743


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)