BAC Information

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BAC

Clone NameMSMg01-470E19
Chromosome1 (Build37)
Map Location 72,129,058 - 72,129,466
singlet/doubletsinglet
Overlap genenone
Upstream geneBard1, LOC667900, Abca12, LOC629101, Atic, Fn1, LOC100042814, Gabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319
Downstream geneLOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1, Ankar, Rpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470E19.T7 (MSMg01no470_e19.b1)MSMg01-470E19.TJ (MSMg01no470_e19.g1)
ACCAG553334AG553335
length756758
length of high quality
(start - end)
412 (70 - 481)444 (72 - 515)
definitionCHROMAT_FILE: MSMg01no470_e19.b1 PHD_FILE: MSMg01no470_e19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:09 2005CHROMAT_FILE: MSMg01no470_e19.g1 PHD_FILE: MSMg01no470_e19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGGCGGCGCTATACGACTCACTATAGTCCGAGAATCCGCGGAATTC
TCTTTCTATTCTGTTCGGAAGGCATCCTCTAGGATGGCCCCAAGCATCCC
TTGCCTCTTGGGATTTCCCAAGTAGTTTCTTCTCTTGAGTAACTGGCCTC
CAACCAACAGAACCCATCCCTCTTGAGATACCACTTCCCTAATTACACTG
CAGAGACAGCAACTTACCTCCTGCTTCTAAACAGTCTCTAATGCTGGCTT
TGATGAATAAACCAGACATGTTAGAGAGGCCCACAGTCAAGAAGTTGAGG
GTGGTTACTGGCCTTTTTTTAACTGGGTCCTGGAAGACGTAAACCCACAG
TCCTCAAACAAAACAACTCTACCAGCAACCATACAAGTGAGCTGAGATGA
GTTTTCTCATGAGACTCCCACACTGGAAAATGTCTTGGGGTTGCCTTGTG
CAAAATCGGGAAACGCAGTATCTACCTTAGCCGTGCCTAGATTCTTGACC
CAACCTATGGGGTAATTGTATTAAACTGTTGGGTTTGAGGACAACTTTTA
ACGGAGGAGCTCAATGTCCTACTCCCAAATACGACACCTTGTCAATACTG
AATTTTACGCTCCCGAAACTAGCACAAGCAGGAGGGGCCCTCTGATGTTC
TCCCGCCCCTCTCCCCCTGGCACAGACCTTCTTAGAAACTCTGTGACCTG
CCTCCCAACCCGGTTCTCTCACCCTCCACACTTCCCGCTCCCCCACACCC
TTCCCA
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATCCCACAGTGATGAAGGTTGCAAAATA
CTAGGGAACTAAAGAGGTGGCTCAGCAGGTAAGAGTGCCTATTGCTTTTG
CAGAAGACCTGAGCTCAGTTCCCATACCACATTGCATCTCACAACTGCCT
ATAACTCTATCTCCAGGAATTCTGACACCTTCTAGCCTCCCTGGGCACCT
GGGTGCTCGTCCCCTGTAACACACACACAGAGTTAAAATAACAAAAATAA
ATCTTAAAAAGAAATACTGCTTTGGGGACTGGCAAGATAGTTCAGTGGAT
AAAGCGCTGTCTGTGCAAGTGTGAAGGGCTGGGTTCAGATCTCCACACTC
ACATTCACAGAGAGACACAGCAGCACACACCTGTAACTCCAGTCCTGGGC
CGCTCCCATGATGGCCGATCAGCCTGTGTGAAACAGTGAGTTCCAGGCTC
AGTGAGAAACCCTGTCTCATAACAAGCAAACAGGAAAAAAGGAGACGCGC
AAATGAACAACCATAGAACGCACGGATAGTGATGCCTGGGTTCTCCATGT
GCCTGCCTGGTTGAGAAATACATGTGCACACACAATGCAACATGTATGTT
CCCCACGACATATAACATAACAAGTGTGGACCAGTTTCCCCCCCTGTTCC
CCCCACCATAGCCTATCTCTTATATTACCTCTTTTCCTACAGGAATTCGC
CATTCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_e19.b1 MSMg01no470_e19.b1 CHROMAT_FILE:
MSMg01no470_e19.b1 PHD_FILE: MSMg01no470_e19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:09 2005
         (412 letters)



>mm_chr1_72128858_72129669
          Length = 812

 Score =  687 bits (355), Expect = 0.0
 Identities = 395/415 (95%), Gaps = 12/415 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcatcctctaggatggccccaagcatcccttgcctcttgggatttcccaagtagtttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcatcctctaggatggccccaagcatcccttgcctcttgggatttcccaagtagtttc 260

                                                                       
Query: 61  ttctcttgagtaactggcctccaaccaacagaacccatccctcttgagataccacttccc 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcctcttgagtaactggcctccaaccaacagaacccatccctcttgagataccacttccc 320

                                                                       
Query: 121 taattacactgcagagacagcaacttacctcctgcttctaaacagtctctaatgctggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 taattacactgcagagacagcaacttacctcctgcttctaaacagtctctaatcctggct 380

                                                                       
Query: 181 ttgatgaataaaccagacatgttagagaggcccacagtcaagaagttgagggtggttact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgatgaataaaccagacatgttagagaggcccacagtcaagaagttgagggtggttact 440

                                                                       
Query: 241 ggcc------tttttttaactgggtcctggaagacgtaaacccacagtcctcaaacaaaa 294
           ||||      |      |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggccaacagct------aactgggtcctggaagacgtaaacccacagtcctcaaacaaaa 494

                                                                       
Query: 295 caactctaccagcaaccatacaagtgagctgagatgagttttctcatgagactcccacac 354
           |||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 495 caaccctaccagcaaccatacaagtgagctgagatgagttttctcttgagacccccacac 554

                                                                  
Query: 355 tggaaaatgtcttggggttgccttgtgcaaaatcgggaaacgcagtatctacctt 409
           ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 555 tgggagatgtcttggggttgccttgtgcaaaatcgggaaacgcagtaactacctt 609


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)