BAC Information

Click to search

BAC

Clone NameMSMg01-470I03
Chromosome1 (Build37)
Map Location 85,261,885 - 85,262,134
singlet/doubletsinglet
Overlap geneC130026I21Rik
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
Downstream geneLOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470I03.T7 (MSMg01no470_i03.b1)MSMg01-470I03.TJ (MSMg01no470_i03.g1)
ACCAG553494AG553495
length799803
length of high quality
(start - end)
77 (80 - 156)250 (77 - 326)
definitionCHROMAT_FILE: MSMg01no470_i03.b1 PHD_FILE: MSMg01no470_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:27 2005CHROMAT_FILE: MSMg01no470_i03.g1 PHD_FILE: MSMg01no470_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:27 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCAATAATTTCCGGCCGCTAAACGACCCCCACATTGNGGCCGTGCCGGAA
TTCCCAGACATTACCACCACCCCCCGATTAATGCAGCCATCCCTATGCCT
GTCAGATTGATAATCTTAACAAAAATGTCTTCAGAGACAGAAACTGCAAA
CACTCAGATACAGATGCGGGGGGCTGCTTATATGAAAGGCACTGAGCCAG
TGATTAACCACCCTATTTACTCCCAAAAGACACAGCACACTGCTGGTATC
TTTATTGGACTTGACCCAATGTCACCGCAGAAATGCCGCTTACGATACCT
GCCCCAGCACAACTTTTTTTTTTTGAGCCCCCGCCGCCGGCATCACACCC
CCCCATTTTTTCTCTCCCATTTTTAGGGGGAGGGATGTATGCCTGCACCT
GTCTCACCGCGCCCCCCCCCACTCAAATACCCCGTCTCTCGCACCCCCTC
ACATATCCCCCCCCCCCTGTACCCTGCTCTTCCTATCTTGTCTGCAATCC
CCCTTTCACCCCCCTGTTTACTTCACCCCATGCCCTCCTACTAGCCACAT
CCCCCCCCTCTCCTCTCCCCCCCCTCTTCCTTTCCCCCCCCCCCCCCCCT
TCTCTTCTCCTTCTCTCTTTCTCCTCCTCCCCCTCCCCTTTTCTCTTCAA
TAAAATTTTTTCTTCTCTCCTCCTTCACCCCCCCCCTTTTCCCTCTTTAA
ACACCATTCCCTTCCTCCCCCCTCTCTCTTTCCCCCCCCCCCCTCCTCTT
TCCCCCCCCTTTTCTTTCCTTCCCCCTTTTTCTCTTGCCCCCTACCCCN
CTCCGATGCAGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGACAGTGCAAGGGTAGCAAAGA
TTAATGCAGCCATCCCTATGCCTGTCAGATTGATAACCACAACAAAAATG
TCTTCAAAGACAGAAACTGCAAACACTCAGAGACAGATACCTCCACCTGC
TTATATGAAAGGCACTGAGCCAGTGATTAACCACCCTATTTATTCCCAAA
AGACACAGCACACTGTTGGTATCACTAGTGGACTTGACCAAATGTCACAG
GAGAAATGGTGCTTTCTTAGGACATCTGTTTGAGCAGATGTAGCCCTGAC
TGAGTCCCTGTTTGTTTCATCACACCTTCCTCTCATCTTTTCTATTTTTA
TTTTGAATTATGTATGCATGAGCCTGTCTCACTGTGCTTCCTGCACGCAA
GTACCGTGTTCACGGAATGCACAAAAGGCTGCCTGATTCCCACTTCCCAC
GACCATTTTCTTGTACACCTTACCTACACGTCGTGCCCCCCCTCTTCCAC
GCTCCTTCTTTCCGTTCTACAGCACCCCCCCACATCTCCCGCCCCCTCTT
CTCCCTTTTTTCTGCTCCCCCCCCTCTTTTCCTCTTTCTCCCCCCCCTCC
CCTTCTTCTTCCCTACCCCCCTCCCCCCTCATTACTTTCTTTCTTCCCCT
CTCTTTCTCCCCCCCCTCTTTCCCGCTCTCTCCTTTTTCTCTTCTCCCCC
TTCCTTTTTTTTCTTCCCCCACTTTTTTTTCCTCTTCCCCCCTTTTTTTC
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_i03.g1 MSMg01no470_i03.g1 CHROMAT_FILE:
MSMg01no470_i03.g1 PHD_FILE: MSMg01no470_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:27 2005
         (250 letters)



>mm_chr1_85261685_85262334
          Length = 650

 Score =  445 bits (230), Expect = e-129
 Identities = 245/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagacagtgcaagggtagcaaagattaatgcagccatccctatgcctgtcagattgataa 60
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 cagacagtgcaaaggtagcaaagattaatgcagccatccctacgcctgtcagattgataa 260

                                                                       
Query: 61  ccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagatacctccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacaacaaaaatgtcttcaaagacagaaactgcaaacactcagagacagatacctccac 320

                                                                       
Query: 121 ctgcttatatgaaaggcactgagccagtgattaaccaccctatttattcccaaaagacac 180
           || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 ctacttatatgaaaggcactgagccagtgattaaccacgctatttattcccaaaagacac 380

                                                                       
Query: 181 agcacactgttggtatcactagtggacttgaccaaatgtcacaggagaaatggtgctttc 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcacactgctggtatcactagtggacttgaccaaatgtcacaggagaaatggtgctttc 440

                     
Query: 241 ttaggacatc 250
           ||||||||||
Sbjct: 441 ttaggacatc 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)