NCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTCCTTTCTTACATGAATCCCTTTCATCTCCTTTTGTTGTCTT
ATTGCTCTAGATAGAACTTCAAGTTCTATATTGAATAGAGAATGAGCAGC
CTTGTCTTGTCCCTGATTTTAGTGGGATTGCTTCAAGTTTCTCTCCATTT
AATTTGATATTGACTGTTGACTACATGTAGTTTTTATTATGTTTAGGTAT
GTGCCTTAAATTCCTGATCTCTTTAAGACGTTTACCATGAAGGAGGGGTG
GGTTTTGTTTAAGGCTTTTTCAGCACCTAATGAAATAATCATGAGCTATT
TGTCTTTCACTTTGCTTATATAGTGGATTATGTTAATAAATTTTCATATA
TTGAACCATTTCTGTACTCCCTAGGGTGAAGCCTACTTGACCATAGTAAA
TGATGTCTGCTGAAGTGCCTGTGGACTGGAAGTTTGGTAATCTTAAAAAC
AAACAAACAAACAACAACAACAACAAAAACAAAAACATTATTTGAAAAAT
AAAATAAAGAATTGAAAATTCTAAAAATTAACCTGTTTATTCTTTTCTGA
GTTGTTTATTTATTTGTTTATTTTGTTTTCAATTTTATTTAATCTTTTAT
TTGTTGGTTTTGTTTTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCC
TGGCTATCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTTAGAA
ATTCACCTGCCTCTGCCTC

GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATAAATGTGCAGTAAGAGCTTGTGTGT
CACAAATAAGAAAAAGCTGTTACTCCCATTTTCATACAGTATCCTATCTT
TCGAGGGGTAAAATCACCAAGGTCCTACTACTTTAGACCACAATTCCCTG
GGCACTAAACCTTCCATGTTTTATAACTCCCTCTGCCCTTACATTGACAT
ACACCCACAAATTACCTGCTTAATTAATGTTAATTAAACAAAAAACACTC
CCTTTCCTCAGGGGAAATCTTTCAGGGAAATACTTTCAGACCTCAGGAAT
TATGGAAAATGGGGAGATCCGTGGAGCTCATGGAGGCATTTGTGGATTCA
GCCCTTCTACATGAAATTTAGTTTCATAATGACAAAATTCATCTCAGTCT
TAAATCAAAGATTTAAAGGAAGCAATTAACAGTAAGACCTTCCCCGTAGC
CAACACAATCATCCATGTATACCCAGAAGTCAGGTTTCTGCTTGTTGAGT
TTCCTTCTCTTCCATGGCTGGGGATACAACTACTAAGCAGTCCAAGTGCT
GGCAGGGCTGGTCTGTGAACGAGGTGACTCACCTGCATTATCAGGCTAGA
AACCTGTTGGCCCACTTGGAGTGGCATACTTCTCTGAGTATACTGAAGTA
CTGTGAAAACCAAGCCCTCTCTCAACTTAGGTTATTTTTTTTTTATTCTG
TAAAAN

Query= MSMg01no471_a24.g1 MSMg01no471_a24.g1 CHROMAT_FILE:
MSMg01no471_a24.g1 PHD_FILE: MSMg01no471_a24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:11 2005
         (679 letters)



>mm_chr1_108695428_108696506
          Length = 1079

 Score = 1216 bits (629), Expect = 0.0
 Identities = 666/679 (98%), Gaps = 2/679 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cataaatgtgcagtaagagcttgtgtgtcacaaataagaaaaagctgttactcccatttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataaatgtgcagtaagagcttgtgtgtcacaaataagaaaaagctgttactcccatttt 260

                                                                       
Query: 61  catacagtatcctatctttcgaggggtaaaatcaccaaggtcctactactttagaccaca 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catacaatatcctatctttcgaggggtaaaatcaccaaggtcctactactttagaccaca 320

                                                                       
Query: 121 attccctgggcactaaaccttccatgttttataactccctctgcccttacattgacatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attccctgggcactaaaccttccatgttttataactccctctgcccttacattgacatac 380

                                                                       
Query: 181 acccacaaattacctgcttaattaatgttaattaaacaaaaaacactccctttcctcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acccacaaattacctgcttaattaatgttaattaaacaaaaaacactccctttcctcagg 440

                                                                       
Query: 241 ggaaatctttcagggaaatactttcagacctcaggaattatggaaaatggggagatccgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaaatctttcagggaaatactttcagacctcaggaattatggaaaatggggagatccgt 500

                                                                       
Query: 301 ggagctcatggaggcatttgtggattcagcccttctacatgaaatttagtttcataatga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 ggagctcatggaggcatttgtggattcagcccttctacatgaaatttagtttcataacga 560

                                                                       
Query: 361 caaaattcatctcagtcttaaatcaaagatttaaaggaagcaattaacagtaagaccttc 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 caaaattcatctcagtcttaaatcaaagatttaaaggaaacaattaacagtaagaccttc 620

                                                                       
Query: 421 cccgtagccaacacaatcatccatgtatacccagaagtcaggtttctgcttgttgagttt 480
            || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccatagccaacataatcatccatgtatacccagaagtcaggtttctgcttgttgagttt 680

                                                                       
Query: 481 ccttctcttccatggctggggatacaactactaagcagtccaagtgctggcagggctggt 540
           |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 681 ccttctcttccatggctggggatacaactagtaagcaggccaagtgctggcagggctggt 740

                                                                       
Query: 541 ctgtgaacgaggtgactcacctgcattatcaggctagaaacctgttggcccacttggagt 600
           |||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 ctgtgaacaaggtgactcatctgcattatcaggctagaaaccttttggcccacttggagt 800

                                                                       
Query: 601 ggcatacttctctgagtatactgaagtactgtgaaaaccaagccctctctcaacttaggt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ggcatacttctctgagtatactgaagtactgtgaaaaccaagccctctctcaacttaggt 860

                              
Query: 661 tattttttttttattctgt 679
           ||||||||||  |||||||
Sbjct: 861 tatttttttt--attctgt 877


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)