BAC Information

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BAC

Clone NameMSMg01-471B08
Chromosome1 (Build37)
Map Location 93,135,675 - 93,282,477
singlet/doubletdoublet
Overlap geneUbe2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap
Upstream geneCops8, Col6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1
Downstream gene1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1, Twist2, Hdac4, LOC100040419
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471B08.T7 (MSMg01no471_b08.b1)MSMg01-471B08.TJ (MSMg01no471_b08.g1)
ACCAG553934AG553935
length744745
length of high quality
(start - end)		662 (75 - 736)605 (79 - 683)
definitionCHROMAT_FILE: MSMg01no471_b08.b1 PHD_FILE: MSMg01no471_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:12 2005CHROMAT_FILE: MSMg01no471_b08.g1 PHD_FILE: MSMg01no471_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,281,816 - 93,282,477)(93,135,675 - 93,136,279)
sequence
NAACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCCTGGTACCGGAGTAATGGATGCTGGGAACTGATCCTGGGT
CCCCTGCAGGAGCAATAAGTGCTCTTAACCACTGAGCCATCTCTCCAGCC
ACAGCTTAGTTTTTGAAACAAATGTTGTTTTGTTTGTTTTGTGTCTTAAG
ATAGGTCTCACTCTGTAGGCCAGGCAGATCTTGGAGCTCACAATGTTAGC
ATTTCTCATGCTCCAGCCTCCTGTGTTCTGGGATAACAGGTGTGAGCTAC
TATACTGGACTCAACAATTAATATGGATGAAACTTACTTAAATCTCTTAA
ATACCTTTTCCCACATGTCAGTGTGACTGGTATCTCAACAATGTGAATTT
CATGTTCATTGCTTGAGATGAAACTTCAAAGCTTTAATGAAGCTGAGTGT
GGTGAAATTACCTACGTGTAATCTCAGCACACCTGGGCAGGGGCACAAGG
CTCTGTAATTGGAGGCCAGACTGGGCTAAATATGGAGCCCCCACCTCAAA
ACTCAGTAAAGCAAGCTTCAGTGAAGAGGTGTGTTCATTGTTTTAGGGAT
ATAATTAACCTTTAATTCGTTCTTCTAGTACTCGGGTTTCATACTTTGCT
GTGTTTGATGGACATGGAGGAATACGAGCCTCGAAATTTGCTGCACAGAA
TTTGCACCAGAACTTAATCAGGAAATTTCCTAAAGGTGAGACTG

NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGGAGACAGAACACTTGAT
GTTTTAGCTTTTGTGCTTAGATCTACGTTCCACTTGGAAACTGGAGCCCT
TCATAATCTTTCCCTTGAAGTGGTGAGTGGAGGGGGCCTGAGGCGTGAGA
TTCAAACCAAAAGAGCCCCATAAGCAAGTGTAACCCCTCCACAAGTAGGT
TATTTCTGGGCTTTGCTCGGTCCGCGTCCTTGGGATGCCCCCTGGAGGCT
GGAGCTGTGTTACAGCCAGGTCCTTCAACAGTGCTGCCCCATTGCAGAAG
CAGCTTGGGTCATAGCCTGCCCATGGACACTGCAGGTTTCAAGAGAGCAA
GTTCAGCAGTCCCTACAGGACATAGGGACCAGAACTACTCAGAGAACACA
CTCCCTGCACCTTCTTAAAAGGAACACAGTCCCCTCACTCACTTGTTTCA
TCCTGAATCTTGGGTGAGGCCACCAATGGTCACCATCCAGAGTAGTGGTT
CTCAACTTTGCTAATGTAGCAATCCTTTAATACATACACATCTCCTCATG
CTGTGGTGAGCCTCAAGCATGTATATATCTATATATGTGTATATGTATAT
ATGTATATGTATACATATGTGTATATGTATATATGTATATTGTGAATGGG
NAAANGNNNNNNNANNNNNNNNNNNNNNTNTTTTTTTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_b08.b1 MSMg01no471_b08.b1 CHROMAT_FILE:
MSMg01no471_b08.b1 PHD_FILE: MSMg01no471_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:12 2005
         (662 letters)



>mm_chr1_93281675_93282736
          Length = 1062

 Score = 1265 bits (654), Expect = 0.0
 Identities = 660/662 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggatgctgggaactgatcctgggtcccctgcaggagcaataagtgctcttaaccactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atggatgctgggaactgatcctgggtcccctgcaggagcaataagtgctcttaaccactg 744

                                                                       
Query: 61  agccatctctccagccacagcttagtttttgaaacaaatgttgttttgtttgttttgtgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 agccatctctccagccacagcttagtttttgaaacaaatgttgttttgtttgttttgtgt 684

                                                                       
Query: 121 cttaagataggtctcactctgtaggccaggcagatcttggagctcacaatgttagcattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttaagataggtctcactctgtaggccaggcagatcttggagctcacaatgttagcattt 624

                                                                       
Query: 181 ctcatgctccagcctcctgtgttctgggataacaggtgtgagctactatactggactcaa 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctcacgctccagcctcctgtgttctgggataacaggtgtgagctactatactggactcaa 564

                                                                       
Query: 241 caattaatatggatgaaacttacttaaatctcttaaataccttttcccacatgtcagtgt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caattaaaatggatgaaacttacttaaatctcttaaataccttttcccacatgtcagtgt 504

                                                                       
Query: 301 gactggtatctcaacaatgtgaatttcatgttcattgcttgagatgaaacttcaaagctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gactggtatctcaacaatgtgaatttcatgttcattgcttgagatgaaacttcaaagctt 444

                                                                       
Query: 361 taatgaagctgagtgtggtgaaattacctacgtgtaatctcagcacacctgggcaggggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatgaagctgagtgtggtgaaattacctacgtgtaatctcagcacacctgggcaggggc 384

                                                                       
Query: 421 acaaggctctgtaattggaggccagactgggctaaatatggagcccccacctcaaaactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acaaggctctgtaattggaggccagactgggctaaatatggagcccccacctcaaaactc 324

                                                                       
Query: 481 agtaaagcaagcttcagtgaagaggtgtgttcattgttttagggatataattaaccttta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agtaaagcaagcttcagtgaagaggtgtgttcattgttttagggatataattaaccttta 264

                                                                       
Query: 541 attcgttcttctagtactcgggtttcatactttgctgtgtttgatggacatggaggaata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 attcgttcttctagtactcgggtttcatactttgctgtgtttgatggacatggaggaata 204

                                                                       
Query: 601 cgagcctcgaaatttgctgcacagaatttgcaccagaacttaatcaggaaatttcctaaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cgagcctcgaaatttgctgcacagaatttgcaccagaacttaatcaggaaatttcctaaa 144

             
Query: 661 gg 662
           ||
Sbjct: 143 gg 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_b08.g1 MSMg01no471_b08.g1 CHROMAT_FILE:
MSMg01no471_b08.g1 PHD_FILE: MSMg01no471_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:12 2005
         (605 letters)



>mm_chr1_93135475_93136479
          Length = 1005

 Score = 1139 bits (589), Expect = 0.0
 Identities = 601/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccaggagacagaacacttgatgttttagcttttgtgcttagatctacgttccacttgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaggagacagaacacttgatgttttagcttttgtgcttagatctacgttccacttgga 260

                                                                       
Query: 61  aactggagcccttcataatctttcccttgaagtggtgagtggagggggcctgaggcgtga 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactagagcccttcataatctttcccttgaagtggtgagtggagggggcctgaggcgtga 320

                                                                       
Query: 121 gattcaaaccaaaagagccccataagcaagtgtaacccctccacaagtaggttatttctg 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagtcaaaccaaaagagccccataagcaagtgtaacccctccacaagtaggttatttctg 380

                                                                       
Query: 181 ggctttgctcggtccgcgtccttgggatgccccctggaggctggagctgtgttacagcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctttgctcggtccgcgtccttgggatgccccctggaggctggagctgtgttacagcca 440

                                                                       
Query: 241 ggtccttcaacagtgctgccccattgcagaagcagcttgggtcatagcctgcccatggac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtccttcaacagtgctgccccattgcagaagcagcttgggtcatagcctgcccatggac 500

                                                                       
Query: 301 actgcaggtttcaagagagcaagttcagcagtccctacaggacatagggaccagaactac 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 501 actgcaggtttcaagagagcaagttcagcagtccctacaggacatagggatcagaactac 560

                                                                       
Query: 361 tcagagaacacactccctgcaccttcttaaaaggaacacagtcccctcactcacttgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcagagaacacactccctgcaccttcttaaaaggaacacagtcccctcactcacttgttt 620

                                                                       
Query: 421 catcctgaatcttgggtgaggccaccaatggtcaccatccagagtagtggttctcaactt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catcctgaatcttgggtgaggccaccaatggtcaccatccagagtagtggttctcaactt 680

                                                                       
Query: 481 tgctaatgtagcaatcctttaatacatacacatctcctcatgctgtggtgagcctcaagc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctaatgtagcaatcctttaatacatacacatctcctcatgctgtggtgagcctcaagc 740

                                                                       
Query: 541 atgtatatatctatatatgtgtatatgtatatatgtatatgtatacatatgtgtatatgt 600
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 741 atgtatatatctatatatgtgtatatgtatatatgtatatgtgtacatatgtgtatatgt 800

                
Query: 601 atata 605
           |||||
Sbjct: 801 atata 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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