GGGGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGAT
GCGCGGAATTCTTTGGTTACCTCTGAGCCCCATTTTTTAATGGGGTTATT
TGATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTAGATATTA
GTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGT
GTTCTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAT
TTTCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTG
CTGTTCTGTTCAGGAATTTTTCTTTTGTGCCCATATCTTCCAGGCTTTTC
CCCACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTC
CTTGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGA
TTCCCATTCTTCTACATGATAATAACCAGTTGTGCCAGCACCAATTGTTG
AAAATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTTGAAGAT
CAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCC
ATTGGTCTACTTGTCTGTCTCTATTAGCCCAAAACCTAGGATACCCAAGA
TATAAGATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTG
AAGTGTGGACACTATGCCCCTCCTTAGAAGTGGGA

TTTCTCGATGCTATGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAGCTGGAAAGTTGGTGGTAC
CATCCCCTGGTACCAACATCCATGTATCTCTACACTTGACTGTGGCGTGA
GCAGCTGGTTCAGGCCTCAGCTGATACAATGGACTATAACCTGACACTGT
GAGCTATAATGCCTGCCGTTTTGCCCAAGCTGTGTTTTGACAAGTATTTA
TTTTCTTCAGATGAGCAGAAAGGAAACTAGAAGACCCAACTCTAGTTTCT
TTTCTGTTTTAGCTAAACTGTTTGGTATTTTTCAGATCCATGATGTCCCA
GATTACAATGGTAATAATAGTAATAATTAAATTAGCAATACATTGTGATG
CTTGTTTGTGACTGGTGGATGATTTTAATAGCAATTATTTATTTTTTTCC
TTGGCTAATATCTATACATAATAGAGTAGATGAGTGGAAATGGCTAGAAT
CCTCGGTTCAGATTCCAGCTCTGTCTCCAGTCTGTTCTTGGAGATTCAGC
ATCATTCTTAGTACAATCGAAGGAGCAGATCTGCACCTCGAAGCACAGCT
GTGACAGGTGCGGGAGGAGAGGTGGATAGGCAGGCTCCTCAAATAGAGGA
AGGTTCATTAGACTCTGTCTGAGAGGTGAGCAGAGAAACAGATGGCTCCA
TGATTTCCCGCAAATCACACCTATTATG

Query= MSMg01no471_d05.g1 MSMg01no471_d05.g1 CHROMAT_FILE:
MSMg01no471_d05.g1 PHD_FILE: MSMg01no471_d05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:22 2005
         (577 letters)



>mm_chr1_187443477_187444457
          Length = 981

 Score =  990 bits (512), Expect = 0.0
 Identities = 563/582 (96%), Gaps = 7/582 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagctggaaagttggtggtaccatcccctggtaccaacatccatgtatctctacacttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ccagctggaaagttggtggtaccatcccctggtaccaacatccatgtatctctacacttg 261

                                                                       
Query: 61  actgtggcgtgagcagctggttcaggcctcagctgatacaatggactataacctgacact 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actgtggtgtgagcagctggttcaggcctcagctgatacaatggactataacctgacact 321

                                                                       
Query: 121 gtgagctataatgcctgccgttttgcccaagctgtgttttgacaagtatttattttcttc 180
           |||||||||||||||  || ||||  |||||||| |||||| ||||||||| ||||||||
Sbjct: 322 gtgagctataatgccaccc-ttttaaccaagctgggttttgccaagtatttgttttcttc 380

                                                                       
Query: 181 agatgagcagaaaggaaactagaagacccaactctagtttcttttctgttttagctaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgagcagaaaggaaactagaagacccaactctagtttcttttctgttttagctaaac 440

                                                                       
Query: 241 tgtttggtatttttcagatccatg----atgtcccagattacaatggtaataatagtaat 296
           ||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||
Sbjct: 441 tgtttggtatttttcagatccatgtctgatgtcccagattacaatggtaataatagtaat 500

                                                                       
Query: 297 aatta-aattagcaatacattgtgatgcttgtttgtgactggtggatgattttaatagca 355
           ||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcacaac-agcaatacattgtgatgcttgtttgtgactggtggatgattttaatagca 559

                                                                       
Query: 356 attatttatttttttccttggctaatatctatacataatagagtagatgagtggaaatgg 415
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 attatttatttttttccttggctaatatgtatacataatagagtagatgagtggaaatgg 619

                                                                       
Query: 416 ctagaatcctcggttcagattccagctctgtctccagtctgttcttggagattcagcatc 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctagaatcctcggttcagattccagctctgtctccagtctgttcttggagattcagcatc 679

                                                                       
Query: 476 attcttagtacaatcgaaggagcagatctgcacctcgaagcacagctgtgacaggtgcgg 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attcttagtacaatcgaaggagcagatctgcacctcgaagcacagctgtgacaggtgcgg 739

                                                     
Query: 536 gaggagaggtggataggcaggctcctcaaatagaggaaggtt 577
           ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 740 gaggagaggtggataggcaggttcctcaaatagaggaaggtt 781


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 981
Length adjustment: 10
Effective length of query: 567
Effective length of database: 971
Effective search space:   550557
Effective search space used:   550557
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)