Query= MSMg01no471_i03.b1 MSMg01no471_i03.b1 CHROMAT_FILE:
MSMg01no471_i03.b1 PHD_FILE: MSMg01no471_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:46 2005
(684 letters)
>mm_chr1_98173271_98174354
Length = 1084
Score = 793 bits (410), Expect = 0.0
Identities = 449/466 (96%), Gaps = 8/466 (1%)
Strand = Plus / Plus
Query: 5 gaattctacaagtctccttcccagatatgaaaattcactactcagtgttggctttcttcc 64
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 205 gaattctacaagtctccttcccagatatgagaattcattactcagtgttggctttcttcc 264
Query: 65 tggaatcaagatactgacatttttataaagtttcagcattgtgacaactgtaactctcag 124
||||||||| | |||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 265 tggaatcaaaacactgacatttgtataaagttacagcattgtgacaactgtaactctcag 324
Query: 125 acaacagacacataagagatcccccgagaatgtaataactttacagggaagctcagagaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaacagacacataagagatcccccgagaatgtaataactttacagggaagctcagagaa 384
Query: 185 acaaagaacatctttttgaaaggaatcatattgtctgcactgtaaacacacacacacaca 244
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 385 acaaagaacatctttttgaaaggaatcttattgtctgcactgtaaacacacacacacaca 444
Query: 245 cacacacacacacacacacacacacacacatacacacacacacacaggaatgcttagtgt 304
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 445 cacacacacacacacacacacacacacaca--cacacacac------gaatgcttagtgt 496
Query: 305 accaagtcacttacattcctcttaatgctgaaggatgaactcaagtaagagttgagggaa 364
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 497 accaagtcacttacattcctcttaatgctgaaggatgaaatcaagtaagagttgagggaa 556
Query: 365 ctgaccctggcatgaaatcctaactctctcctgtacaaagcagcacagaactctgatata 424
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 557 ctgaccctggcatgaaatcctaactctctcctgtgcaaagcagcacagaactctgatata 616
Query: 425 aaataccagtcctacctcctgatactgaagttagcaatttttgttt 470
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaataccagtcctacctcctgatactgaagttagcaatttttgttt 662
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 23
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1084
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1074
Effective search space: 723876
Effective search space used: 723876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_i03.g1 MSMg01no471_i03.g1 CHROMAT_FILE:
MSMg01no471_i03.g1 PHD_FILE: MSMg01no471_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:46 2005
(645 letters)
>mm_chr1_98320574_98321618
Length = 1045
Score = 524 bits (271), Expect = e-153
Identities = 295/303 (97%), Gaps = 2/303 (0%)
Strand = Plus / Minus
Query: 344 tatacatgtctcatatagtgctgcacatttgacagtgtcctattctctgcacctaggaag 403
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 tatatatgtctcatatagtgctgcacatttgacagtgtcctattctctgcacctaggaag 986
Query: 404 tttagagtgtttccctattcatcattatctattgcagaagaatgcttctctgtagaggtc 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 tttagagtgtttccctattcatcattatctattgcagaagaatgcttctctgtagaggtc 926
Query: 464 tgacagatgcaaatgcctgttgtcaaaatgataagccattaagagtcagtttaacca-ta 522
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 925 tgacagatgcaaatacctgttgtcaaaatgataagccattaagagtcagtttaa-cagta 867
Query: 523 tagtagtccactcatcagaattctcagctcttgctcaattctgtaaatggggaatgtgac 582
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||
Sbjct: 866 tagtagtccactcatcagaattctcagctcttgctcatttctgtaaatagggaatgcgac 807
Query: 583 tggtatctggatttaaaggaagggccttttgtggatactgtctcttagacttttttctct 642
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 806 tggtatctggatttaaaggaagggccttttgtggatactgtctcttagacttctttctct 747
Query: 643 ctg 645
|||
Sbjct: 746 ctg 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
