BAC Information

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BAC

Clone NameMSMg01-471I04
Chromosome1 (Build37)
Map Location 95,078,627 - 95,242,614
singlet/doubletdoublet
Overlap geneE030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7
Upstream geneLOC100040419, LOC665883, Ndufa10, Olfr1416, Olfr1415, Olfr1414, Olfr1413, Olfr1412, Olfr1411, Olfr1410, Olfr12, Myeov2, Otos, Gpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik
Downstream geneTmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471I04.T7 (MSMg01no471_i04.b1)MSMg01-471I04.TJ (MSMg01no471_i04.g1)
ACCAG554261AG554262
length731737
length of high quality
(start - end)		648 (52 - 699)640 (81 - 720)
definitionCHROMAT_FILE: MSMg01no471_i04.b1 PHD_FILE: MSMg01no471_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:47 2005CHROMAT_FILE: MSMg01no471_i04.g1 PHD_FILE: MSMg01no471_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,078,627 - 95,079,271)(95,241,975 - 95,242,614)
sequence
NCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCAATGGATTCCCCACAGCATTAGGAAGGTGGAGAGACACT
GCCCTCGGGCCATAGAACCATGCCTGGGACCAGTGCTGGCCCAGGTCTGC
TCTTTCTATGGCATGGAACCAGAAACCTGTGGAAAAAACCCGAGGCGCAC
ATGAGGGTCCTAGAAGAGTTCCTAGCGCAATCACACTAGCTCTGAGGTAC
CCACCTGCCAATGGGTCCCGGCTTTCTGATGCCCTTCCCACCACACCACT
CTATGGGAAATGACTTTTTCTTCAGCCCCCACCCGAAGAGTCCCTCTAAC
AAAGACCATGAGGACCCCCTTACAATGGCTCAAGAGTCTGCCCTTCCTGT
GGTGCATTCCGGGATAGGGAATCTTCCTAGCACAGGGCGGGAGATGCTGG
GAATGGACTTCAGGGAATAGAAGCCGCAGAAGGCCTTCCAAAGATTAGTA
AACTAAGAAGCTATGAGTCAGAGCTCAGCTCACAGCCAGCCAGATGAGGG
TGCCGGCAGACCCAGCCCCGAATTATGCCCCAGCACACTGGTGGGACAGG
GTGAGGGTCTTGGTGTCCAGCATGGCCTCTCCAGGTGACACTACAATCCA
TTATAATTGAAGCCCCTTGACCCCAACTGTCACATTGCTGGTGGCTGAGA
AGCAGGTTCTTGGCCATCAGACACTCCTGTG

NNNAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTATGAACATTTGAATG
TCTTCTACATCCAATAGTATTTAAGATACAGAGACAGTAACTGGGAGGCC
ACATGGAGACAATTAACATGCCATCCTTCCCCTCCGAGAACTTGTAAAGA
GTTGACAAGTGTCAACTGAAATCTGGATCATCTACAATGGGAAACACTAA
TGACACCAGATACAGAAGTACCTTCCAAGAGGCTCTCACATCTGATGTGA
TGACCCTTCTCACATCTCACTGTGACCCTTCTGCCACATACCTTCATTGA
TGTCTCACTATCCATTTGGCCAAGATAAATGGTTAAATTTTCAGGCCCAC
ATTCCAAAAGAAATCAAGACTAGCTAAGATGAGACTGTGGGCAGAGTGAA
TGAAAACAAGAATGTCTCAAAAAATGGCAGAAGCCCCAGGTAAACTGCTG
GTGTTAAATAACCACAGGATAGAGTTAATCATGCAAAGTTTTTTGGAGTA
AATAAAACAGATTTTGAGTTATGAACAAAGCAACAATGAAACATGGCTCT
GGCAAATGATCTTCCTTTCTAAACCTCAATATTCCCCTCTGTAGACCAGA
GTTAGTAGAGTACCTTCTCCTGTCAGGACCAAATAAGAAAGGACACAAGA
GTAGCTCATGTGTATGACACGGAGAAGAATGTATGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_i04.b1 MSMg01no471_i04.b1 CHROMAT_FILE:
MSMg01no471_i04.b1 PHD_FILE: MSMg01no471_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:47 2005
         (648 letters)



>mm_chr1_95078424_95079471
          Length = 1048

 Score = 1208 bits (625), Expect = 0.0
 Identities = 640/649 (98%), Gaps = 8/649 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaatgga----ttccccacagcattaggaaggtggagagacactgccctcgggc 59
           |||||||||||||    |    ||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaatggaagggt----cacagcattaggaaggtggagagacactgccctcgggc 259

                                                                       
Query: 60  catagaaccatgcctgggaccagtgctggcccaggtctgctctttctatggcatggaacc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 catagaaccatgcctgggaccagtgctggcccaggtctgctctttctatggcatggaacc 319

                                                                       
Query: 120 agaaacctgtggaaaaaacccgaggcgcacatgagggtcctagaagagttcctagcgcaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agaaacctgtggaaaaaacccgaggcgcacatgagggtcctagaagagttcctagcgcaa 379

                                                                       
Query: 180 tcacactagctctgaggtacccacctgccaatgggtcccggctttctgatgcccttccca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcacactagctctgaggtacccacctgccaatgggtcccggctttctgatgcccttccca 439

                                                                       
Query: 240 ccacaccactctatgggaaatgactttttcttcagcccccacccgaagagtccctctaac 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccacaccactctatgggaaatgactttttcttcagcccccacccgaagagtccctctaac 499

                                                                       
Query: 300 aaagaccatgaggacccccttacaatggctcaagagtctgcccttcctgtggtgcattcc 359
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagaccgtgaggacccccttacaatggctcaagagtctgcccttcctgtggtgcattcc 559

                                                                       
Query: 360 gggatagggaatcttcctagcacagggcgggagatgctgggaatggacttcagggaatag 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggatagggaatcttcctagcacagggcgggagatgctgggaatggacttcagggaatag 619

                                                                       
Query: 420 aagccgcagaaggccttccaaagattagtaaactaagaagctatgagtcagagctcagct 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagccgcagaaggccttccaaagattagtaaactaagaagctatgagtcagagctcagct 679

                                                                       
Query: 480 cacagccagccagatgagggtgccggcagacccagccccgaattatgccccagcacactg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cacagccagccagatgagggtgccggcagacccagccccgaattatgccccagcacactg 739

                                                                       
Query: 540 gtgggacagggtgagggtcttggtgtccagcatggcctctccaggtgacactacaatcca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gtgggacagggtgagggtcttggtgtccagcatggcctctccaggtgacactacaatcca 799

                                                            
Query: 600 ttataattgaagccccttgaccccaactgtcacattgctggtggctgag 648
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttataattgaagccccttgaccccaactgtcacattgctggtggctgag 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_i04.g1 MSMg01no471_i04.g1 CHROMAT_FILE:
MSMg01no471_i04.g1 PHD_FILE: MSMg01no471_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:47 2005
         (640 letters)



>mm_chr1_95241775_95242814
          Length = 1040

 Score = 1230 bits (636), Expect = 0.0
 Identities = 639/640 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtttatgaacatttgaatgtcttctacatccaatagtatttaagatacagagacagtaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 agtttatgaacatttgaatgtcttctacatccaatagtatttaagatacagagacagtaa 781

                                                                       
Query: 61  ctgggaggccacatggagacaattaacatgccatccttcccctccgagaacttgtaaaga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 780 ctgggaggccacatggagacaattaacatgccatccttcccctctgagaacttgtaaaga 721

                                                                       
Query: 121 gttgacaagtgtcaactgaaatctggatcatctacaatgggaaacactaatgacaccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gttgacaagtgtcaactgaaatctggatcatctacaatgggaaacactaatgacaccaga 661

                                                                       
Query: 181 tacagaagtaccttccaagaggctctcacatctgatgtgatgacccttctcacatctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 tacagaagtaccttccaagaggctctcacatctgatgtgatgacccttctcacatctcac 601

                                                                       
Query: 241 tgtgacccttctgccacataccttcattgatgtctcactatccatttggccaagataaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tgtgacccttctgccacataccttcattgatgtctcactatccatttggccaagataaat 541

                                                                       
Query: 301 ggttaaattttcaggcccacattccaaaagaaatcaagactagctaagatgagactgtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ggttaaattttcaggcccacattccaaaagaaatcaagactagctaagatgagactgtgg 481

                                                                       
Query: 361 gcagagtgaatgaaaacaagaatgtctcaaaaaatggcagaagccccaggtaaactgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gcagagtgaatgaaaacaagaatgtctcaaaaaatggcagaagccccaggtaaactgctg 421

                                                                       
Query: 421 gtgttaaataaccacaggatagagttaatcatgcaaagttttttggagtaaataaaacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtgttaaataaccacaggatagagttaatcatgcaaagttttttggagtaaataaaacag 361

                                                                       
Query: 481 attttgagttatgaacaaagcaacaatgaaacatggctctggcaaatgatcttcctttct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 attttgagttatgaacaaagcaacaatgaaacatggctctggcaaatgatcttcctttct 301

                                                                       
Query: 541 aaacctcaatattcccctctgtagaccagagttagtagagtaccttctcctgtcaggacc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aaacctcaatattcccctctgtagaccagagttagtagagtaccttctcctgtcaggacc 241

                                                   
Query: 601 aaataagaaaggacacaagagtagctcatgtgtatgacac 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aaataagaaaggacacaagagtagctcatgtgtatgacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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