Query= MSMg01no471_j19.b1 MSMg01no471_j19.b1 CHROMAT_FILE:
MSMg01no471_j19.b1 PHD_FILE: MSMg01no471_j19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:55 2005
(667 letters)
>mm_chr1_173508667_173509733
Length = 1067
Score = 1274 bits (659), Expect = 0.0
Identities = 665/667 (99%)
Strand = Plus / Minus
Query: 1 ttctcctgtagacaacctggtctagatttctgctaggtttgaaagagtgataatcactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ttctcctgtagacaacctggtctagatttctgctaggtttgaaagagtgataatcactgt 808
Query: 61 caaaacactccaagtgtactgatcatttcaaacaatttgctgaagcactgtgactgtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 caaaacactccaagtgtactgatcatttcaaacaatttgctgaagcactgtgactgtgtt 748
Query: 121 ctgggccccagggaataccaatgtttcattctccattcaatggtgtgttttaagtgaggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 ctgggccccagggaataccaatgtttcattctccattcaatggtgtgttttaagtgaggc 688
Query: 181 ttaagaagtcctgttgaccggaataggatgggttaaagaggctggaggttaccttgcact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttaagaagtcctgttgaccggaataggatgggttaaagaggctggaggttaccttgcact 628
Query: 241 gtatcatatattacatggtgcctctatctccagggaaagtctgctgtggcaactgctcca 300
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gtatcatagagtacatggtgcctctatctccagggaaagtctgctgtggcaactgctcca 568
Query: 301 gcacctgctcttgcacagaaaagagtaaagggacataaaataatttctgtctaggctcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gcacctgctcttgcacagaaaagagtaaagggacataaaataatttctgtctaggctcag 508
Query: 361 gccgagcactgacagatatcacaaaagaagaggtctccatgagtagaggggtgtgaaact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gccgagcactgacagatatcacaaaagaagaggtctccatgagtagaggggtgtgaaact 448
Query: 421 gggagaacttcattatcaaacagcccagaatgagagtagatgagaagtatgtttggcagt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gggagaacttcattatcaaacagcccagaatgagagtagatgagaagtatgtttggcagt 388
Query: 481 ggacctgcagcaaggaacatcccaggaaccaacaacctgacaggttccctgtctcttcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggacctgcagcaaggaacatcccaggaaccaacaacctgacaggttccctgtctcttcct 328
Query: 541 tcactttagtaacagagaacttccttgcctttgctgacttctggttgaaagttgccagca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tcactttagtaacagagaacttccttgcctttgctgacttctggttgaaagttgccagca 268
Query: 601 taagcactgacagtgggcagagctctcttcagacttgtggtctgaacctttcctctttag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 taagcactgacagtgggcagagctctcttcagacttgtggtctgaacctttcctctttag 208
Query: 661 ggcactg 667
|||||||
Sbjct: 207 ggcactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_j19.g1 MSMg01no471_j19.g1 CHROMAT_FILE:
MSMg01no471_j19.g1 PHD_FILE: MSMg01no471_j19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:55 2005
(617 letters)
>mm_chr1_173485256_173486273
Length = 1018
Score = 866 bits (448), Expect = 0.0
Identities = 529/556 (95%), Gaps = 5/556 (0%)
Strand = Plus / Minus
Query: 1 ccactctcaggactacccacctccaagacactttgcaaacttgggagccccaagcctaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ccactctcaggactacccacctccaagacactttgcaaacttgggagccccaagcctaac 517
Query: 61 ttgaaatttgttaatttagta-aaaaacctcaaagaatccattaaaagctacttctagct 119
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ttgaaatttgttaattcagtagaaaaacctcaaagaatccattaaaagctacttctagct 457
Query: 120 gattcatagcacaaataagaatacagacaaaaatatgaagtgacggaagaagaacatagt 179
|||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||
Sbjct: 456 gattcatagcacaaataagactacagagaaaaatatgaagtgagggaagaagaacatagt 397
Query: 180 -ccaaggtgcaaacaattccaatgaacagagttctggtcctcagagaggtaggcagacag 238
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gcc-acgtgcaaacaattccaatgaacagagttctggtcctcagagaggtaggcagacag 338
Query: 239 agcctaagtttcaaaacaaggttgctgcacattgtacatgtgtacaaaactgtccccaaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 agcctaagtttcaaaacaaggttgctgcacattgtacatgtgtacaaaactgtccccaaa 278
Query: 299 ctgatgttaaattcaaacaaatgtctttcagtaataatatgatttaacaatataacttaa 358
|||||||||||||||| ||||||||| ||||||| ||||| |||||||||||||||| ||
Sbjct: 277 ctgatgttaaattcaaccaaatgtctatcagtaacaatattatttaacaatataactgaa 218
Query: 359 gttactgattttaaaagacatttaagagactggagagatggctcagtagttaagggcact 418
||||||| ||||||||| | |||||| |||||||| ||||||||||||||||||||||||
Sbjct: 217 gttactggttttaaaagtcgtttaagggactggagcgatggctcagtagttaagggcact 158
Query: 419 gactgctcttccagaggtcctgagttcaattcccagcaaccacatggtgattcacaacca 478
|||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 157 gactgctctttcagaggtcctgagttcaatttccagcaaccacatggtggttcacaacca 98
Query: 479 tctataatgggatctaaaatgccctcttctggtttgtctgaagacagctacagtgtactg 538
||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||
Sbjct: 97 tctataatgggatctaaaatgccctcttctgatgtgtctgtagacagctacagtgtactc 38
Query: 539 ata-a-ataaaataaa 552
||| | ||||||||||
Sbjct: 37 atatacataaaataaa 22
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1018
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1008
Effective search space: 611856
Effective search space used: 611856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
