BAC Information

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BAC

Clone NameMSMg01-471M12
Chromosome1 (Build37)
Map Location 166,373,221 - 166,533,627
singlet/doubletdoublet
Overlap geneAtp1b1, LOC100040065
Upstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471M12.T7 (MSMg01no471_m12.b1)MSMg01-471M12.TJ (MSMg01no471_m12.g1)
ACCAG554468AG554469
length764764
length of high quality
(start - end)		139 (76 - 214)595 (78 - 672)
definitionCHROMAT_FILE: MSMg01no471_m12.b1 PHD_FILE: MSMg01no471_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:09 2005CHROMAT_FILE: MSMg01no471_m12.g1 PHD_FILE: MSMg01no471_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,533,489 - 166,533,627)(166,373,221 - 166,373,815)
sequence
TCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCG
GAATTCTTTCTTTTCCCATAAAAATACTGTTGATCCAGAAAACTGGTACT
GTATACTTGCAGTATGTATGTTACATAAATCTTCGGTGTATCTAATGACC
AATAGGATCTTAGATTCAATACCATCCAGAAAGTTCATTTTGTTCCTCTA
CTGCTTATTAATAAGTCCAGCTGAGAGTTTCAGGTTTTAGGATTACTCAA
GCAAAGTATTTACTACAAACCTGCTATACCAGAGCCCGGCTTAAGTCCTG
CGTCCTATCTTGCTTTCTATGGCCGTGATAAACATCTTGAACTAAGGAAC
TTGGACATGACAGAGTTTATTTGGCCTCCTGATCACAGCTCACTGCAGAG
GGAAGTTGGATCTGGAGCACATCCAGGATCCTGCACGCATGAACTGATGA
TGAATTTATGAGAGACACTCTTGAGTGCCTTGTTCCCCTGTATAGTCTAT
GACCACCGGCTTAGGTGTGATCCAATTAGAACCGTTAGGCATTGGTCCGA
ATTATGTCCCCCCAAAATGCTTTATGTATCCGCACCTAAACATATCATTC
AACCCGTGTCGTACTTCTCCCTACGTTTTCTACCTTGTTAATTCCTCTCT
CACCACATCACAACCAATTGTGTTTAATATTGATCCCTATATAATTTGGC
ACGAATTGCCCTTCACTTTTTTATTTCGCCCTTTTAACTGTCTTTCCGCC
ACACCTTGACCACC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCGTGACATTGCCTTTAAACTACT
AAAGCAACGGAGCCAAGCGACAACTTGTCCTTCTCAATAGTGGGACCACG
TGCACCCATCCATCCCTGAGCCAGTCACTTACTGCCACAGTCCTCGAAAA
TCATGTCGTCCTTCTGGGCTGAATCCTTGTACTTTTCCAGGAACCTGATG
ATGTTTAGCACGTAGGCCTCGTAGCTCTTGGGGTCATTAGGACGGAAGGA
GATCTCAGTCTTCTGGATCTGGGGAATCTGTGTCAATCCTACGCCAGGGA
AGAGTCAGAAAGGCGGTCATTATTAGTAGGAAGGCGACCGGGAGGCGCCA
AACGCAGGCGTTCCCCGCACAAACACGCTTCCCTCGCCACTCATTCCCAC
TTGGCTCATGGGATGGATTAAATCCCCACTCCCCTGGTGAATTCAATCCG
ATGGCATTTAGATTAGGTATTGAACTGTAGCGATAGTGATGTAATATCGA
ATGTCATCCAGTTTCCTTGGCAACACGTCACAGTAGCATTAACCTGTTTT
ATGAACGAGAATGCCACTTGCAGTGAAAGGCACAGTGTTCTGTCCGAGGG
GGCCAGAGAAAGCAGTAGAACCAGAATCCCAACCCAGCTGTGCAGTCCTC
CAAGGCCTGTGGCTCTCTAGTGCCCTCCCATAATCACATTTAAAGCTGTG
GTGCTAGCANCCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_m12.b1 MSMg01no471_m12.b1 CHROMAT_FILE:
MSMg01no471_m12.b1 PHD_FILE: MSMg01no471_m12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:09 2005
         (139 letters)



>mm_chr1_166533289_166533827
          Length = 539

 Score =  246 bits (127), Expect = 5e-70
 Identities = 136/139 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgttgatccagaaaactggtactgtatacttgcagtatgtatgttacataaatcttcg 60
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 339 actgttgatccagaaaactggtactgtatacttgcagtatatatgttacataaagcttcg 280

                                                                       
Query: 61  gtgtatctaatgaccaataggatcttagattcaataccatccagaaagttcattttgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 gtgtatctaatgaccaataggatcttagattcaataccatccagaaagttcattttgttc 220

                              
Query: 121 ctctactgcttattaataa 139
           ||||||||| |||||||||
Sbjct: 219 ctctactgcctattaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 539
Length adjustment: 8
Effective length of query: 131
Effective length of database: 531
Effective search space:    69561
Effective search space used:    69561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no471_m12.g1 MSMg01no471_m12.g1 CHROMAT_FILE:
MSMg01no471_m12.g1 PHD_FILE: MSMg01no471_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:09 2005
         (595 letters)



>mm_chr1_166373021_166374015
          Length = 995

 Score = 1096 bits (567), Expect = 0.0
 Identities = 588/595 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgtgacattgcctttaaactactaaagcaacggagccaagcgacaacttgtccttctcaa 60
           ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||
Sbjct: 201 cgtgacattgcctttaaactactaaagcaacggagccaaacgacaacccgtccttctcaa 260

                                                                       
Query: 61  tagtgggaccacgtgcacccatccatccctgagccagtcacttactgccacagtcctcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgggaccacgtgcacccatccatccctgagccagtcacttactgccacagtcctcga 320

                                                                       
Query: 121 aaatcatgtcgtccttctgggctgaatccttgtacttttccaggaacctgatgatgttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaatcatgtcgtccttctgggctgaatccttgtacttttccaggaacctgatgatgttta 380

                                                                       
Query: 181 gcacgtaggcctcgtagctcttggggtcattaggacggaaggagatctcagtcttctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcacgtaggcctcgtagctcttggggtcattaggacggaaggagatctcagtcttctgga 440

                                                                       
Query: 241 tctggggaatctgtgtcaatcctacgccagggaagagtcagaaaggcggtcattattagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggggaatctgtgtcaatcctacgccagggaagagtcagaaaggcggtcattattagt 500

                                                                       
Query: 301 aggaaggcgaccgggaggcgccaaacgcaggcgttccccgcacaaacacgcttccctcgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggaaggcgaccgggaggcgccaaacgcaggcgttccccgcacaaacacgcttccctcgc 560

                                                                       
Query: 361 cactcattcccacttggctcatgggatggattaaatccccactcccctggtgaattcaat 420
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cactcattcccacttggctcacgggatggattaaatccccactcccctggtgaattcaat 620

                                                                       
Query: 421 ccgatggcatttagattaggtattgaactgtagcgatagtgatgtaatatcgaatgtcat 480
           ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 621 ccgatggcatttagattaggtatcgaactgtatcgatagtgatgtaatatcgaatgtcat 680

                                                                       
Query: 481 ccagtttccttggcaacacgtcacagtagcattaacctgttttatgaacgagaatgccac 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 ccagtttccttggcaacacgtcacagtagcattaacctgttttatgaacgagaatgtcac 740

                                                                  
Query: 541 ttgcagtgaaaggcacagtgttctgtccgagggggccagagaaagcagtagaacc 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgcagtgaaaggcacagtgttctgtccgagggggccagagaaagcagtagaacc 795


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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