BAC Information

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BAC

Clone NameMSMg01-472D08
Chromosome1 (Build37)
Map Location 82,593,914 - 82,594,501
singlet/doubletsinglet
Overlap geneCol4a3
Upstream geneEG621020, LOC433328, EG665145, Irs1, Rhbdd1, Col4a4
Downstream gene5230400G24Rik, Tm4sf20, LOC100039491, Hrb, A030005L19Rik, A030014E15Rik, EG621362, A030003K21Rik, LOC665225, LOC100039524, EG665236, LOC665246, Slc19a3, LOC665196, LOC621495, A030005K14Rik, 5530401N06Rik, EG665272, Ccl20, LOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472D08.T7 (MSMg01no472_d08.b1)MSMg01-472D08.TJ (MSMg01no472_d08.g1)
ACCAG554796AG554797
length742899
length of high quality
(start - end)		588 (50 - 637)---
definitionCHROMAT_FILE: MSMg01no472_d08.b1 PHD_FILE: MSMg01no472_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:46 2005CHROMAT_FILE: MSMg01no472_d08.g1 PHD_FILE: MSMg01no472_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTACATTCATGAAAATATTGCAAATGTGACTTTTCCCTCCAG
CCTATACCTTTCTCACGTTAGGCTTCCTATTCTTTATAGGTATGTATAGG
TTTGTGTAGGACAAACATGTGATCGCCACTCACTCTTAGGTGAGTTCCAT
GTGTGCCCAGGGCACTTATTCACTGAACACAGCACCAGGAGTTCACCTGT
GTTCGTCTTAAAAATCTCTCCATAGCCTTTAGGCCACTGTGGCTTTTAGA
GATTGAGACCCTCTGAGTGCTTAAGTAGAAATTCAGGGATACTGTGAAAG
GGCCACCCAGGAAGATGGCTGTTCTGTTAAAATGGTATCATCCTAGTTTC
TCCTTTAACTGAAAAGGGAGTTGAGGTAAATGAGCTATGGTGAAGGTATG
TTATGATTAAGAGTTTAGGCGGAAGCCTCATATAAACCTTGTGGAACAAA
AATACTCTACACACTGTGTGTTTTCACAGGGCTTGGGAAGTCTTTTACTC
CATGATGGATGGCTGCCCTTTTGGCTGAATGCCACAGTGCGAGTATGGTC
AGCTCCAGAGGGATGCAGGAATGCAGGGCGTTCTCCAGCTAGANCACCCT
GCAGTTGGAAGAAACACTGGCTAAAGTTCAGGGCCCTTTGTCAGCTGCAA
TACTGACAAAGCTAGTCTCACATTTACATCAGGAATTCCTAT

NCCCAACCACGTGGANAAAGGAGCGCAATCCTCACGAGGGGNANNNANAN
AATTCCAAAAGAAGGCANCNGAGAAGAANACGCACAGGCAAGCCAGCGAC
ATTTTCCCCCACACAGACAACGCCGCACAACCCCCCACAGACGGAACGTA
CTCCGCGGGGGGGGAGAAACCATACAGCCGCCACACCCCAGCCATGCACC
GCATAAGCACAGGGCCGGCAGGACCGCACGCTCGCAGTAGAGAGCCTTTT
CCAACGAAGAAGACACAAACAGCACACCTACCCCGCCCGCACCAAACCCA
CCACGCAAAGGAGACAAGAGTACCACTTTTTTTTTTTATTAAACGCGACC
CCACACAGCACACACCCCAACATCCACCAGCCCATCCCCCCCCCCCGCGA
CCCAGAACACACCACCCCACCACAACCCCGAATTATTAAATATAACATAT
AGAAACACCTAACACCAACATAACAACCATAACGCAGCACCCTCTCCCAC
AAAACATACAAACCATTCCACCAACCACCAACAGTCCCGACACAAAACCA
CATATAGAAACCTACACACAACCACCACTCCGACACAAGATACCACCGCA
TCACACACCGACCCCCGCCCTCACCCACCTGAACATCCACGAAAACCCAC
ACCTATAATACCCAGCAACATACCACCACTCAACCATGCTCCCCCTTCCA
ACCATACAACACCACAACCCAACACCCTCACAACCAGCTCCCCCCCACCC
AACACCCACCACCGTCACATAACTACATTACCCCCGCTAATTACACACGC
ACCTTACCAACTCAGAACTCATAGCACCCTCCAAACACACACCAATAAAA
ATCAACATACGTCAGAGTAGTACACCACCCAACTGACATATTCACTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_d08.b1 MSMg01no472_d08.b1 CHROMAT_FILE:
MSMg01no472_d08.b1 PHD_FILE: MSMg01no472_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:46 2005
         (588 letters)



>mm_chr1_82593710_82594701
          Length = 992

 Score = 1054 bits (545), Expect = 0.0
 Identities = 577/591 (97%), Gaps = 10/591 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctac---attcatgaaaatattgcaaatgtgacttttccctccagcctatacctt 61
           |||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 gaattctacaaaa--catgaaaatattgcaaatgtgacttttccctccagcctatacctt 735

                                                                       
Query: 62  tctcacgttaggcttcctattctttataggtatgtataggtttgtgtaggacaaacatgt 121
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 734 tctcacgttaggcttcctattctttgtaggtatgtataggtttgtgtaggacaaacatgt 675

                                                                       
Query: 122 gatcgccac---t-cactcttaggtgagttccatgtgtgcccagggcacttattcactga 177
           |||||||||   | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 gatcgccacaggtgc-ctcttaggtgagttccatgtgtgcccagggcacttattcactga 616

                                                                       
Query: 178 acacagcaccaggagttcacctgtgttcgtcttaaaaatctctccatagcctttaggcca 237
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 615 acacagcaccaggagttcacctgtgtttgtcttaaaaatctctccatagcctttaggcca 556

                                                                       
Query: 238 ctgtggcttttagagattgagaccctctgagtgcttaagtagaaattcagggatactgtg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ctgtggcttttagagattgagaccctctgagtgcttaagtagaaattcagggatactgtg 496

                                                                       
Query: 298 aaagggccacccaggaagatggctgttctgttaaaatggtatcatcctagtttctccttt 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 495 aaagggccacccaggaagatggctgttctgttaaaatggtatcatcctagtttctcctta 436

                                                                       
Query: 358 aactgaaaagggagttgaggtaaatgagctatggtgaaggtatgttatgattaagagttt 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aactgaaaagggagttgaggtaaatgagctatggtgaaggtatgttatgattaagagttt 376

                                                                       
Query: 418 aggcggaagcctcatataaaccttgtggaacaaaaatactctacacactgtgtgttttca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aggcggaagcctcatataaaccttgtggaacaaaaatactctacacactgtgtgttttca 316

                                                                       
Query: 478 cagggcttgggaagtcttttactccatgatggatggctgcccttttggctgaatgccaca 537
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cagggctcgggaagtcttttactccatgatggatggctgcccttttggctgaatgccaca 256

                                                              
Query: 538 gtgcgagtatggtcagctccagagggatgcaggaatgcagggcgttctcca 588
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 gtgcgagtatggtcagctccagagggatgcaggaatgcagggcgttctcca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 992
Length adjustment: 10
Effective length of query: 578
Effective length of database: 982
Effective search space:   567596
Effective search space used:   567596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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