BAC Information

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BAC

Clone NameMSMg01-472G12
Chromosome1 (Build37)
Map Location 184,287,652 - 184,288,166
singlet/doubletsinglet
Overlap genenone
Upstream geneCnih3, Ccdc121, A230079K17Rik, Lbr, EG433384, Enah, Srp9, EG625823, Degs1, 1700047M11Rik, Fbxo28
Downstream geneLOC435657, ENSMUSG00000073482, Trp53bp2, Capn2, LOC666624, Capn8, 4922505E12Rik, Susd4, Tlr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472G12.T7 (MSMg01no472_g12.b1)MSMg01-472G12.TJ (MSMg01no472_g12.g1)
ACCAG554947AG554948
length741761
length of high quality
(start - end)
238 (319 - 556)517 (77 - 593)
definitionCHROMAT_FILE: MSMg01no472_g12.b1 PHD_FILE: MSMg01no472_g12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:02 2005CHROMAT_FILE: MSMg01no472_g12.g1 PHD_FILE: MSMg01no472_g12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAAGAGGATCCGNGGAA
TTCTTGGTCCCAAAACTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGATTTTCATT
AGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGTTTCTTTCTTTTGTGCCCATATCTTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATC
CACTTAGATTTGAGCTTAGTACAAGGAGATAAGTATGCATCGATTCGCAT
TCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGC
TGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGA
CCATAGGTGTGTGGGTTCTTTTCTGGATCTTCAATTCTATTCCATTGGTC
TACTTGTCTGTCTCTATACCAGCATCATGCAGTTTTATTCTCTATTGTTC
TGTAGCAAAGCTTTAGGTCTGGTATGGTGATTCCGCCCGTAACTCTTTTA
TTCTTGAAAAAAGTTTTTACTATCCATAGGTTTTTGGTTAT
CGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTGACAAGCAGCAATCTGNTGGGCTTCACATATGCCCACTGGT
GCCCAGTTCTCCACTCATTTCATTTTATTTCCCCATTAGCCTGGCAGCTC
CTGAGCATCAGTCCTGGAGATGCTGTCACCGAAGGTGGCACCACTCAGCT
GTTGCTCTCTAAACATTCATAGCAGCAGGTCCATTTCTACCAGACAATTT
GGTGGATGGCTGCTTATTAACCACCAAAGCCTAGTCGCACTCATGGTTAG
TAGGAATATCTTTTATTATATCCAAATATGGAAAACCTAAATTGAAATTT
CCATTATAATCCAGAAAGTTGGTTTCAAGCTTTAGGAATGCTAAAACCCA
GTTTTCTTCCCATTTACATTTAAATAATCCCAACACCTAAATGTCATTCA
AGCTTGAACTTTGAAGAGGCAATGAAGGTCTGTTGTCATCCGAGAACAGG
GCTTCTAGCTGCTTCTTATTGCACTGACCCAGGAAAAGTGGCTTTGTCCT
CTCGGGCTTGTTTCCTGTATACCAATCACACACACACACACACACACACA
CTCACACACACTCCCCCAGTTGAAATGTTCTCCCTAGGGAGTTCTTTTTT
TTTTATTCCCCAAATGTCCTTTAACGTAAAGGGAAATTTTGTGATAAGCT
TAAACTTACAACCCTTTCATATGAAAAATGATGGTTTTTACCCATATAGT
AAAACTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_g12.g1 MSMg01no472_g12.g1 CHROMAT_FILE:
MSMg01no472_g12.g1 PHD_FILE: MSMg01no472_g12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:02 2005
         (517 letters)



>mm_chr1_184287449_184288366
          Length = 918

 Score =  934 bits (483), Expect = 0.0
 Identities = 507/517 (98%), Gaps = 5/517 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gcttcacatatgcccactggtgcccagttctccactcatttcattttatttccccattag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gcttcacatatgcccactggtgcccagttctccactcatttcattttatttccccattag 263

                                                                       
Query: 64  cctggcagctcctgagcatcagtcctggagatgctgtcaccgaaggtggcaccactcagc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cctggcagctcctgagcatcagtcctggagatgctgtcaccgaaggtggcaccactcagc 323

                                                                       
Query: 124 tgttgctctctaaacattcatagcagcaggtccatttctaccagacaatttggtggatgg 183
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 tgttgctctctaaacattcatagcagcaggtccatttctaccagacaagttggtggatgg 383

                                                                       
Query: 184 ctgcttattaaccaccaaagcctagtcgcactcatggttagtaggaatatcttttattat 243
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |  | 
Sbjct: 384 ctgcttattaaccaccaaagcctattcgcactcatggttagtaggaatatctttga--ac 441

                                                                       
Query: 244 a---tccaaatatggaaaacctaaattgaaatttccattataatccagaaagttggtttc 300
           |   |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 442 aagatccaaatatggaaaacctaaattgaaatttccattagaatccagaaagttggtttc 501

                                                                       
Query: 301 aagctttaggaatgctaaaacccagttttcttcccatttacatttaaataatcccaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aagctttaggaatgctaaaacccagttttcttcccatttacatttaaataatcccaacac 561

                                                                       
Query: 361 ctaaatgtcattcaagcttgaactttgaagaggcaatgaaggtctgttgtcatccgagaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ctaaatgtcattcaagcttgaactttgaagaggcaatgaaggtctgttgtcatccgagaa 621

                                                                       
Query: 421 cagggcttctagctgcttcttattgcactgacccaggaaaagtggctttgtcctctcggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 cagggcttctagctgcttcttattgcactgacccaggaaaagtggctttgtcctctcggg 681

                                                
Query: 481 cttgtttcctgtataccaatcacacacacacacacac 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 682 cttgtttcctgtataccaatcacacacacacacacac 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 918
Length adjustment: 10
Effective length of query: 507
Effective length of database: 908
Effective search space:   460356
Effective search space used:   460356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)