BAC Information

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BAC

Clone NameMSMg01-472H07
Chromosome1 (Build37)
Map Location 19,942,725 - 19,943,172
singlet/doubletsinglet
Overlap genenone
Upstream geneEG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b, LOC100040198, LOC226901
Downstream genePkhd1, Il17a, Il17f, Mcm3, Paqr8, Efhc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472H07.T7 (MSMg01no472_h07.b1)MSMg01-472H07.TJ (MSMg01no472_h07.g1)
ACCAG554985AG554986
length760748
length of high quality
(start - end)
448 (72 - 519)421 (79 - 499)
definitionCHROMAT_FILE: MSMg01no472_h07.b1 PHD_FILE: MSMg01no472_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:06 2005CHROMAT_FILE: MSMg01no472_h07.g1 PHD_FILE: MSMg01no472_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGAT
CCGCGGAATTCATGTTTACCTACTCTCAGATTTCTGAACTCTGAGGCCCC
TGAATTCAGCCTTGAAACAATTGCAGTCCTGGTGGACAGCAGCGTATGTT
GGAAGAGTCAGAAATTTTCCTCTCTACAGAAATTTTGTGTTTCCACTAAT
TTTTCTTTTAGGTTTTTTTATTAATTTTTTTAATGTATATGAGGGATTTA
ATCTTCGGGCACCACAGTTAAGGTAAAGATCGATTTGCATACATCAAAAT
GAGTAAAATCTTCAGTGTTTATTATATACTCTTACAACTATTAAGACATT
TGCTTGCATTGCCCCTGTGTGGATGTCTGTGACTGGCATACTCTCTGCAA
ATGAGGAAACAGCAGCTCTGAAACCTGTGAAGGGGCCCATTCTGAGTAGA
CAGTGAGCTCTGGGGACCCATCACAGGACAATATGGCCAGTCAACAAAGA
AATCTGTCTGTGAGCCAGAGTTTCAGTCACTAAGTGTAGGAATGTATGAC
TTCTTGTCCTACATTGGTTTTCAATGCAATACTTGGAATATAATACTGGG
GATAGCCCTGAACTACATTCCTTTAGCAAAATTCCTCTCATCTATTTCTT
TCTTATAATGGTTCACCTCTCCAATAATCTCTGGCCTAAATTTCCTTCCT
TTCCCCTGGATACCCATCTTGATACCCCCCTTTCCTCCACTGAAATCTTT
CCCTGGATAN
CCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGATCCATACTTATCTCCT
TGTACTAAGGTCAAATCTAAGTGGATAAAGGAACTTCACATAAAACCAGA
GACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGG
GCACAGGAGAAAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTAAGA
TCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGC
AAAAGACACTGTCAATAAGACTTAAAGACCACCAACAGATTGGGAAAGGA
TCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAA
GAACTCAAGAAGGTGGACTTCAGAAAATCAAGTAACCCCATTAAAAAATG
GGGCTCAGAACTGAACAAAGAATTCTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGACAAAATGTTCATCATCCTTAATCATCAGGGAAATGCAC
ATCAAAACAACCCTGAGATTCCTCCTCACACCAGCCAGAATGGTTAAGAT
CAAACTCTCAGGTGACCGCATATGTTCGCGTGTATGAGGAGAATGACCAA
TATTCTTCCTTGTTGGGAGAAATCGCCGCTTGCCTCTCCGTTCTGAAATC
TACTCTGCCTATTTCTCTCCACCCGCTTTTTTCCCCACTTCTTTCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_h07.b1 MSMg01no472_h07.b1 CHROMAT_FILE:
MSMg01no472_h07.b1 PHD_FILE: MSMg01no472_h07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:06 2005
         (448 letters)



>mm_chr1_19942525_19943372
          Length = 848

 Score =  797 bits (412), Expect = 0.0
 Identities = 439/448 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctcagatttctgaactctgaggcccctgaattcagccttgaaacaattgcagtcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctcagatttctgaactctgaggcccctgaattcagccttgaaacaattgcagtcctg 260

                                                                       
Query: 61  gtggacagcagcgtatgttggaagagtcagaaattttcctctctacagaaattttgtgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtggacagcagcgtatgttggaagagtcagaaattttcctctctacagaaattttgtgtt 320

                                                                       
Query: 121 tccactaatttttcttttaggtttttttattaatttttttaatgtatatgagggatttaa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tccactaatttttcttttaggtttttttattattttttttaatgtatatgagggatttaa 380

                                                                       
Query: 181 tcttcgggcaccacagttaaggtaaagatcgatttgcatacatcaaaatgagtaaaatct 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tcttcgggcaccacagttaaggtaaagatcaatttgcatacatcaaaatgagtaaaatct 440

                                                                       
Query: 241 tcagtgtttattatatactcttacaactattaagacatttgcttgcattgcccctgtgtg 300
           ||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtgtttaccaaatactcttacaactattaagacatttgcttgcattgcccctgtgtg 500

                                                                       
Query: 301 gatgtctgtgactggcatactctctgcaaatgaggaaacagcagctctgaaacctgtgaa 360
           |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 gatgtctgtgcctggcatactctctgcagatgaggaaacagcagctctgaaacctgtgaa 560

                                                                       
Query: 361 ggggcccattctgagtagacagtgagctctggggacccatcacaggacaatatggccagt 420
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 561 ggggcccattctgagtagacagtgagctctggggaaacatcacaggacaatatggccagt 620

                                       
Query: 421 caacaaagaaatctgtctgtgagccaga 448
           ||||||||||||||||||||||||||||
Sbjct: 621 caacaaagaaatctgtctgtgagccaga 648


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)