Query= MSMg01no472_i14.b1 MSMg01no472_i14.b1 CHROMAT_FILE:
MSMg01no472_i14.b1 PHD_FILE: MSMg01no472_i14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:12 2005
(588 letters)
>mm_chr1_99755465_99756453
Length = 989
Score = 1089 bits (563), Expect = 0.0
Identities = 580/589 (98%), Gaps = 7/589 (1%)
Strand = Plus / Plus
Query: 4 ggaattctata----ttctctaccatagacaagcatatgaacgaatctgtattaaggatg 59
||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctataaaactt---taccatagacaagcatatgaacgaatctgtattaaggatg 260
Query: 60 ctctcaaagattaagtgaaagttgattttatcaattaacaacaacaataaaaaaatcaat 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 ctctcaaagattaagtgaaagttgattttatcaatcaacaacaacaataaaaaaatcaat 320
Query: 120 gaatcataagaataaagacttctggattcttctattgaataaaaaatgtcaatcaaatgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcataagaataaagacttctggattcttctattgaataaaaaatgtcaatcaaatgc 380
Query: 180 atcattattttgtaatatacatagggttttgatggctggaccagtttttcatatgctaac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcattattttgtaatatacatagggttttgatggctggaccagtttttcatatgctaac 440
Query: 240 atatattagtgtgataaaatctgccagttaaagctgggtagaacaaactgcaaattttca 299
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atatactagtgtgataaaatctgccagttaaagctgggtagaacaaactgcaaattttca 500
Query: 300 ttggttgcttaacaagccaactttccagaagcagcttaagattgtatttctcctctatct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttggttgcttaacaagccaactttccagaagcagcttaagattgtatttctcctctatct 560
Query: 360 tagtacagatattaaacaatgaataacagaaaccaagcaacattaagtcccaatgtgtaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagtacagatattaaacaatgaataacagaaaccaagcaacattaagtcccaatgtgtaa 620
Query: 420 aacttgtctctgtcactgagcccaatatgctcatcctgtgattcgtgtagctcataaaac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacttgtctctgtcactgagcccaatatgctcatcctgtgattcgtgtagctcataaaac 680
Query: 480 accaatgtagatcaacaaaattggtcaaagatttgaagatccacaaattcaccataagat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaatgtagatcaacaaaattggtcaaagatttgaagatccacaaattcaccataagat 740
Query: 540 actaccaaacactcataattcactaatgtgtaaaacgctgctcctatct 588
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actaccaaacactcataattcactaatgtgtaaaacgctgctcctatct 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 989
Length adjustment: 10
Effective length of query: 578
Effective length of database: 979
Effective search space: 565862
Effective search space used: 565862
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no472_i14.g1 MSMg01no472_i14.g1 CHROMAT_FILE:
MSMg01no472_i14.g1 PHD_FILE: MSMg01no472_i14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:12 2005
(463 letters)
>mm_chr1_99922904_99923771
Length = 868
Score = 772 bits (399), Expect = 0.0
Identities = 449/471 (95%), Gaps = 11/471 (2%)
Strand = Plus / Minus
Query: 1 caaaatcaggttacaaaagctgtagcatattttccctttccgtttcatgatttcctaaag 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 668 caaaatcaggttacaaaagctgtagcatattttccatttccgtttcatgatttcctaaag 609
Query: 61 cccttttaacgtgttcacaaaacacagcactgaacatacaatgttattaaaagatagtac 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 608 cccttttaacgtgttcacaaaacacagcactgaacatacaatgtaattaaaagatagtac 549
Query: 121 tagaaat---cattgatgagacattctctggccaaccacgttgctctgttttcctgtgtc 177
||||||| || ||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 548 tagaaatcgcca---atgaggcattctctggccaaccacattgctctgttttcctgtgtc 492
Query: 178 cgcttttctgattctgagtcaggcacattaaaaagttttccaagtgaatgtaactgagat 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cgcttttctgattctgagtcaggcacattaaaaagttttccaagtgaatgtaactgagat 432
Query: 238 ggtttttatttaattacataatactgagagtgaatatt-----aaaaaaaaaaccctctt 292
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 431 ggtttttacagaattacataatactgagagtgaatattaaaaaaaaaaaaaaaccctctt 372
Query: 293 aaatcgtatcttttgagaatggcatctttccatgttgaaaggaggatggatggaggaggg 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaatcgtatcttttgagaatggcatctttccatgttgaaaggaggatggatggaggaggg 312
Query: 353 ctgaggaatcaaaggaaagacgaaaggaaacccaaggagaaagtgtttgttagctactgc 412
||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||
Sbjct: 311 ctgaggaatcaaaagaaagacgaaaggaaacccaaggagaaagcgttagatagctactgc 252
Query: 413 agaagtagttctcctgtgctgagattttattgtgggagctgaggaacaagg 463
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 agaagtagttctcctgtgctgagattttattgtgggagctgaggaacaagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 868
Length adjustment: 10
Effective length of query: 453
Effective length of database: 858
Effective search space: 388674
Effective search space used: 388674
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
