BAC Information

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BAC

Clone NameMSMg01-472M15
Chromosome1 (Build37)
Map Location 10,079,842 - 10,080,316
singlet/doubletsinglet
Overlap geneCspp1
Upstream geneSntg1, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542, 3110035E14Rik, Mybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5
Downstream geneArfgef1, Cpa6, LOC433271
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M15.T7 (MSMg01no472_m15.b1)MSMg01-472M15.TJ (MSMg01no472_m15.g1)
ACCAG555240AG555241
length1,206762
length of high quality
(start - end)
---465 (78 - 542)
definitionCHROMAT_FILE: MSMg01no472_m15.b1 PHD_FILE: MSMg01no472_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:32 2005CHROMAT_FILE: MSMg01no472_m15.g1 PHD_FILE: MSMg01no472_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTTCTATGTCGTTAGCGCCGCANCTATAATGTGGNNTCTCTGTTATTC
TCTATAGGATGCGNGGCGGCGTNGCGAGCTGGAGTCTTTCCTCTAAGCAG
CTCTTCTGTTAATTCGTATGATGCAGCTAGCGGTCATAGATTAGTCATAG
GTATCGCAACTATCGCGTGTGTGAGCGGAGACGAGTGAGATGGTGAGTGA
ACATACAAAGGCCACGGCGCGTTAGCATATCGTCAGTTATATGTAATGGT
GTCTTGTCGCTCGCTAGACGTTGGCGTTATCGTATAGTGCGAAGCATACG
GTATGGGACAGGGCGACGAACTAGCGCGCAGTGTGTTTTGTACCGCCGAT
ACGCGATACGTATTATGGTTATTTCGTCTTTATGAAACACGTATCATCCA
CGTACACTATTCGGTTGATGAGTAGATTGAATGGCGGCTGCTCATTCGTC
TGAGTATGCCGCGCAGCGCGCTTATATATTTCATCAATCACTGCCTTATG
ATATTAGTGTCTATGAGAATGTTGCAGGATGACGCATATAGCGCGCGTCA
GAGCTATCGTTTGACAATAGGTAGCGCGAGCACGGGCGANANGGAGTAGC
GCGACGCGAGNGCGGCGGTGGGAATGTTCTGCGTGTATGAGTGGCGCGGC
GTGCGCTGTGGCTTGTCTTATGTGAGCCATGTCTCGGCTATCGTGACGCG
AGTCGCCCCACGAATGGCACTATATACTATGTTTGTTATATGCTCAACAC
GGCTCGCGTCACCTACGATTCCTCCGCGTGGTGTCGTGCATGTGTTGACG
TCCGTGCTACCTATTTACTCCACCTCGACGTTTAAGCTGTACTCCCGATC
ACTCACGACATTTAGCGCACTCTCAGTTCGGTTCAGCTATATCCGCATAT
ATCGTTATTTTTATTCCTCTTGCTTCGAGCGCACGTTCAGCGGATGTAGT
TGCGGCAGGGATAGCGTTGCTGTCCGTGCTTATGTGTCGGTTTATAATAA
CCGCATCTGCAACACGCTATAGGCTATCGTATTCGCGCAGAGTGCGTGTT
TTGTGTATGTTGTTATTTAGGTCTGTGCCCCTATTGCCCTTAGTGATGTC
GTTTCGCTTCCGTACTTCCGATGACGTATGTTTAAAGAAGGTAGTAAGGA
GGTTTTATATTACTCGGGCCCTGTTTTATCGCGGATCTTTAACGTTTTAC
ATTTTG
NCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGTCCATCACTAAGGACTTT
CTGTTCATTCTGTCCAACAGTATTCCTAAGAGCAAATAAACAATTTCAAT
CAATTTATTATAAGAACAAGCAAATTCTAGAAGAAAACAAAAACAATTCT
TTGCCTGGCATATAAAACTATCAAAAAAAAAAAAAAAGTCTTTAAAAACA
AAGCCAACAAGATGGGTCAACAGGAACAGCAAATGCTGTGCCGTGCATTT
CCAGGACTACAAATGAGAAGTTTCTCCTGCAAGTGGTTCTCTGTCCTGCT
GTGGCATGCATGCTGTGGCATGTTTGAGCACATGCACAAACACATGAACA
AAGAAAGAAAATAGAAAATTTTAAAAATGAACTATAAGCCAAAATCAATC
CTTCCCCCCTTAAGACACTTTCACCAGGGTTGTCTCAGCACTAAGAAAAG
TAACGAAGACAACACAGAAGCATAAGGACACACAGCTAGGTGTGTTGCAG
TTCAACTGCAATGCCCGCAGGGGGAGGCAGAGACACCCAGACTCCTGGGG
TAAGCCGATAGGGGAGTGCCAGGTTCCAGGGAGAAAACTTGTCTCAAAAA
CAAGGATTGTATATTCTGAAGAGAAAAACCCGAGTTGAACCCCGGCCCCC
CTAAATAAGGGAAGGACAATGGAAAATCTTCCCCCCCACAAGGCAAAAAA
AAAGATTGCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m15.g1 MSMg01no472_m15.g1 CHROMAT_FILE:
MSMg01no472_m15.g1 PHD_FILE: MSMg01no472_m15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:32 2005
         (465 letters)



>mm_chr1_10079612_10080476
          Length = 865

 Score =  826 bits (427), Expect = 0.0
 Identities = 459/475 (96%), Gaps = 10/475 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgagtccatcactaaggactttctgttcattctgtccaacagtattcctaagagcaaat 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 ctgagtccatcactaagaactttctgttcattctgtccaacagtattcctaagagcaaat 646

                                                                       
Query: 61  aaacaatttcaatcaatttattataagaacaagcaaattctagaagaaaacaaaaacaat 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 645 aaacaatttcaatcaatttattataagaacaagcacattctagaagaaaacaaaaacaat 586

                                                                       
Query: 121 tctttgcctggcatataaaa----ct------atcaaaaaaaaaaaaaaagtctttaaaa 170
           ||||||||||||||||||||    ||      | ||||||||||||||||||||||||||
Sbjct: 585 tctttgcctggcatataaaaccaccttttaaaaacaaaaaaaaaaaaaaagtctttaaaa 526

                                                                       
Query: 171 acaaagccaacaagatgggtcaacaggaacagcaaatgctgtgccgtgcatttccaggac 230
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 acaaagccaacaagatgggtcaacaggaacagcaaatgctgtgccgtgcatttccaggac 466

                                                                       
Query: 231 tacaaatgagaagtttctcctgcaagtggttctctgtcctgctgtggcatgcatgctgtg 290
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 tacaaatgagaagcagctcctgcaagtggttctctgtcctgctgtggcatgcatgctgtg 406

                                                                       
Query: 291 gcatgtttgagcacatgcacaaacacatgaacaaagaaagaaaatagaaaattttaaaaa 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gcatgtttgagcacatgcacaaacacatgaacaaagaaagaaaatagaaaattttaaaaa 346

                                                                       
Query: 351 tgaactataagccaaaatcaatccttccccccttaagacactttcaccagggttgtctca 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgaactataagccaaaatcaatccttccccccttaagacactttcaccagggttgtctca 286

                                                                  
Query: 411 gcactaagaaaagtaacgaagacaacacagaagcataaggacacacagctaggtg 465
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gcactaagaaaagtaacgaagacaacacagaagcataaggacacacagctaggtg 231


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)