BAC Information

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BAC

Clone NameMSMg01-472N14
Chromosome1 (Build37)
Map Location 68,808,821 - 68,809,233
singlet/doubletsinglet
Overlap geneErbb4
Upstream genenone
Downstream geneLOC667842, EG241084, Ikzf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472N14.T7 (MSMg01no472_n14.b1)MSMg01-472N14.TJ (MSMg01no472_n14.g1)
ACCAG555286AG555287
length775770
length of high quality
(start - end)
468 (71 - 538)524 (77 - 600)
definitionCHROMAT_FILE: MSMg01no472_n14.b1 PHD_FILE: MSMg01no472_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:37 2005CHROMAT_FILE: MSMg01no472_n14.g1 PHD_FILE: MSMg01no472_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGAACTCTCCAGCTGGGGAACAGGGTACCCGTAAGTATAGCTTT
ACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCTAT
CAGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGTCTGGCCTTGAACTT
TCTAATGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGGAAATAGCTTT
ACAAGGTATGTTTGGCCTTGAACTTTCTCTAGTGTTAGGAGCCTTTTTGT
TCCTTTTCACATGTTATCTTGTTTTTAAGGCAGGGCTGAAAATTCTGGAT
GAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGC
AAAGAGGAAATATGGTACACAAAATAAGTATACAGGCCTTTCCACGGGTC
TTGAACCCGAGGAAAAGTTTAGGTCAGGTAAGAATACCTGGGGAGAGATT
AGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCATTTAGCGGAGGT
CTCTAGGAGAAGGAGCCTATACTCATCACTAGATGAGCTCAAGAAGCCAG
TTCTTAGTAGTTCTGATTCAGATGAAAAGCTATTAAGGCCTGGGAAGCGC
TCTTCCGAGCATGTGAAACCACTGGACCACTAAAAAAAATCGTCCAGGGA
CCTCCGGAGGCTTTCTTAAAATTTGGGGCCCGAAGGACCAAGGCCCCAAA
AATATTTTTGTGAAACCCCAACAAN
CGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCACAGCCAAATGAAGCATTAGC
CAAAGAGATCTGGCAAAATAATCAGTAAGCTCAAGAGGTCAGAGTCAAGA
AAGGAGGCTCTGTTCTTCGGTACATTGACTTTATATTCACAGTCTGATTC
CAAAAAGATTCCTCTTGATGAAAGGAAACCGTGGAGGATTGATGGCAAAA
TTAAATAGCAGAAATGAAGAAATTAATGTTAGTAGTTCCTGTGGACTGAA
TTGAGTCCCCTAAACATGTATTTTGTAACCACTCCCATGTGGACCTCAGA
ATATGACCTGATTTGAAATTGGTCATAAATGCTAACTAGCTGAGGTAAGG
TCTCACTGGAGGAGGTGGCCTCCAAACCAGTGTAATGATTCTATAGGAAG
GCAGTCATCTGAAAAGAGAAACAGACAGAACTGCAGGTCAGGATGGAAGG
AGACAGTAGTTAATGCAGCCATGTGCTTGGGATCCATCCCATATACAGTC
ACCAAACCCAGACACAACTGCGGATGTCAAGAAGTGCTTGCTGACAGGAA
CCTGATATAGCTGTCTCCTGAGAGGCTTTGCCAGAGTCTGACAAATACAG
AGGCAGATGCTTGGCACGAAACATTGGTCTGAACACAAGGTCCCCGGATA
AGAGAATTAAAGAAGGATTAAAGGAGTTGAAGGGTTTGCAACCCCTAGGA
AGAAGAACAATATTCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_n14.g1 MSMg01no472_n14.g1 CHROMAT_FILE:
MSMg01no472_n14.g1 PHD_FILE: MSMg01no472_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:37 2005
         (524 letters)



>mm_chr1_68808821_68809744
          Length = 924

 Score =  783 bits (405), Expect = 0.0
 Identities = 411/413 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   accacagccaaatgaagcattagccaaagagatctggcaaaataatcagtaagctcaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 accacagccaaatgaagcattagccaaagagatctggcaaaataatcagtaagctcaaga 354

                                                                       
Query: 61  ggtcagagtcaagaaaggaggctctgttcttcggtacattgactttatattcacagtctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggtcagagtcaagaaaggaggctctgttcttcggtacattgactttatattcacagtctg 294

                                                                       
Query: 121 attccaaaaagattcctcttgatgaaaggaaaccgtggaggattgatggcaaaattaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 attccaaaaagattcctcttgatgaaaggaaaccgtggaggattgatggcaaaattaaat 234

                                                                       
Query: 181 agcagaaatgaagaaattaatgttagtagttcctgtggactgaattgagtcccctaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 agcagaaatgaagaaattaatgttagtagttcctgtggactgaattgagtcccctaaaca 174

                                                                       
Query: 241 tgtattttgtaaccactcccatgtggacctcagaatatgacctgatttgaaattggtcat 300
           ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 tgtatgttgaaaccactcccatgtggacctcagaatatgacctgatttgaaattggtcat 114

                                                                       
Query: 301 aaatgctaactagctgaggtaaggtctcactggaggaggtggcctccaaaccagtgtaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 aaatgctaactagctgaggtaaggtctcactggaggaggtggcctccaaaccagtgtaat 54

                                                                
Query: 361 gattctataggaaggcagtcatctgaaaagagaaacagacagaactgcaggtc 413
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  gattctataggaaggcagtcatctgaaaagagaaacagacagaactgcaggtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)