CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAAATGTTACTCACACATGCACAAATGATATAAGTCTAGTAGTG
GCAAGAATTGTTTCTCAGCAAGTTGAGTTGAGTTACATGGCTCCAGTTCC
AGAAATCTAGAACCAAGGAATTCAGCCACTACTAGTGAGTGCTTAAGCCA
AGAGCCTGGGAAGCCGTGCTGTGCAGACAAGATGACTGCGTTCCTCAANG
GCTAAGGNACGGNNNNNNNCCNNNNNNNACACANNNNATCTNCNNGNNAT
AGCTNNNNNTAAAGAAAATGAACGGGGAGGAAGAAAATCTTNNNNNNNGG
NGANNNGNNNAAANNAATNNTTAAATATAAATTAGTGATATTTTANAAAA
TTTTTATTTTTNNNNNNNTNNANNNGGGNNGGGGGGGNAAAATTATAATT
TTTGGAACCGATAACCCTTTAAAAAGGGGCACGGCTACAAAAAATTTTCC
TTTGGGAATTTGTGTGGTTGGGGGCCAAAAAATATGCCCACCTCTCTTTC
CCCNGNNNNNNAAAAACACCCCAGAAATACTGGGGAATTTGTTGGCGGCC
TCTTANACCCTCTCCAAACCCCCCCAATCTTCTTACACTTATTCCATCGA
TTTTATTTCTCCTTATGAATTTNATTCCAATTCCCTATCTCCGTTGTTGT
AGTTTTTTTTCCGTTTGGGGTTGTTGTGTTTTTTTTTCTTTTTTTGTTTT
TTNTTTTCTCTCCTTTATCTCTTTTCCTTCCTTTANCATTTTTCCATTTT
TTTTTCTCCCCCCCTTTACCTCTTTTTTCTATTTTCCTCTCTTTGTCGTT
TTGTTT

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTTGGAATATGTGTGATATTAGA
GATCAAATACAGAATTGTTGATGCATTTAGCATCTTCAGTGCTGATGTGG
TTCTGCTCAAGAGCACTGTGGAGAATGCATGTATTGCCACTGTGACACAG
GTGAGGGCTAAGTCCTTCCCTTCTGCCTGGTGTTGGTTTTCTTATATTGA
GAAAGGAGGGCTGGGGTTTTACACATTTGCCCTAAACCATTATTAGGTGC
AAGCTATTCCTGAGGAAGATCAAGTCAAATGCTTAAAGCTTGCTCTGCTA
AGCACTATTACCAGTAGTTACAAGAAATTGTAATGTTATACCACAGTGGT
CACTATGATTGTTTCTCATTTCACAGATGAACTATGGGGCATTTGAGTTC
TCAAAACCTGCTGAAACTGAGGAAAGGGGAATTCCCTTTGGCAAAACCCA
TTGCCATGATTTTAAAAAAACAACGGGGGGAAAAAAAAACCTTATGTTTT
CCCAAAAATTTAAACCCCCGGGGGGCCCTTTGGAAAATTTTCNNNNNCNC
NAAAANNNNAAATATAAGAACAGGAGTGTTTTTCCCGGGAAGGGTTTCCT
CANAAAACCCTTTTCCCACNAAAATANNNNNNNNGTTTGGAGTTAAACAC
GNNNNNNNNNNNNNNNNNNNNNTNNTCNTNTTTTTTTNTNTTNTTTNNGG
GAACTAAAAANNNNNNGGTTTTTCTT

Query= MSMg01no472_p24.b1 MSMg01no472_p24.b1 CHROMAT_FILE:
MSMg01no472_p24.b1 PHD_FILE: MSMg01no472_p24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:50 2005
         (161 letters)



>mm_chr1_47741600_47742160
          Length = 561

 Score =  304 bits (157), Expect = 2e-87
 Identities = 160/161 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acacatgcacaaatgatataagtctagtagtggcaagaattgtttctcagcaagttgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acacatgcacaaatgatataagtctagtagtggcaagaattgtttctcagcaagttgagt 302

                                                                       
Query: 61  tgagttacatggctccagttccagaaatctagaaccaaggaattcagccactactagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgagttacatggctccagttccagaaatctagaaccaaggaattcagccactactagtga 242

                                                    
Query: 121 gtgcttaagccaagagcctgggaagccgtgctgtgcagaca 161
           |||||||||||||||||||||||||| ||||||||||||||
Sbjct: 241 gtgcttaagccaagagcctgggaagctgtgctgtgcagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no472_p24.g1 MSMg01no472_p24.g1 CHROMAT_FILE:
MSMg01no472_p24.g1 PHD_FILE: MSMg01no472_p24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:50 2005
         (245 letters)



>mm_chr1_47530158_47530802
          Length = 645

 Score =  464 bits (240), Expect = e-135
 Identities = 243/244 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttggaatatgtgtgatattagagatcaaatacagaattgttgatgcatttagcatct 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttgggatatgtgtgatattagagatcaaatacagaattgttgatgcatttagcatct 260

                                                                       
Query: 61  tcagtgctgatgtggttctgctcaagagcactgtggagaatgcatgtattgccactgtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagtgctgatgtggttctgctcaagagcactgtggagaatgcatgtattgccactgtga 320

                                                                       
Query: 121 cacaggtgagggctaagtccttcccttctgcctggtgttggttttcttatattgagaaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaggtgagggctaagtccttcccttctgcctggtgttggttttcttatattgagaaag 380

                                                                       
Query: 181 gagggctggggttttacacatttgccctaaaccattattaggtgcaagctattcctgagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggctggggttttacacatttgccctaaaccattattaggtgcaagctattcctgagg 440

               
Query: 241 aaga 244
           ||||
Sbjct: 441 aaga 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)