MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-473D08
Chromosome	1 (Build37)
Map Location	168,292,692 - 168,292,932
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795
Downstream gene	Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1
Link	Open Mouse BAC browser

Click to get alignment info.

name	Iqwd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74106 MGI:1921356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 30 ESTs, 1 Protein

name	Brp44 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70456 MGI:1917706
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sacy (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:271639 MGI:2660854
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppia-ps1-1625 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:606514
definition	note : peptidylprolyl isomerase A pseudogene 1_1625.1 pseudo : _no_value

name	Mpzl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68481 MGI:1915731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Rcsd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226594 MGI:2676394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Creg1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433375 MGI:1344382
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cd247 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12503 MGI:88334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pou2f1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	LOC665409 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665409
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins pseudo : _no_value

name	Dusp27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240892 MGI:2685055
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gpa33 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:59290 MGI:1891703
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mael (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:98558 MGI:2138453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039795 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 1 Protein

name	Tada1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:27878 MGI:1196415
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pogk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71592 MGI:1918842
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040287 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040287
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 180 ESTs, 2 Proteins

name	EG226601 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226601 MGI:3643319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 Proteins

name	EG226604 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226604 MGI:3643320
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 9 Proteins

name	4831428F09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240894 MGI:3606068
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC240895 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:240895
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC622102 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:622102
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 487 ESTs, 13 Proteins pseudo : _no_value

name	C030014K22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:226610 MGI:2443050
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Uck2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80914 MGI:1931744
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039844 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039844
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Tmco1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68944 MGI:1921173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Aldh9a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56752 MGI:1861622
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Iqwd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149245318 GeneID:74106 MGI:1921356
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 30 ESTs, 1 Protein product : IQ motif and WD repeats 1 transcript_id : XM_976438.2

name	Brp44 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803058 GeneID:70456 MGI:1917706
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : brain protein 44 transcript_id : NM_027430.2

name	Sacy (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801853 GeneID:271639 MGI:2660854
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : soluble adenylyl cyclase transcript_id : NM_173029.2

name	Mpzl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140970932 GeneID:68481 MGI:1915731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myelin protein zero-like 1 transcript_id : NM_001001880.2

name	Mpzl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:140969904 GeneID:68481 MGI:1915731
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : myelin protein zero-like 1 transcript_id : NM_001083897.1

name	Rcsd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781792 GeneID:226594 MGI:2676394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RCSD domain containing 1 transcript_id : NM_001038846.1

name	Rcsd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84781799 GeneID:226594 MGI:2676394
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RCSD domain containing 1 transcript_id : NM_178593.3

name	Creg1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542419 GeneID:433375 MGI:1344382
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cellular repressor of E1A-stimulated genes 1 transcript_id : NM_011804.2

name	Cd247 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13624302 GeneID:12503 MGI:88334
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD247 antigen transcript_id : NM_031162.1

name	Pou2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431253 GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 1 transcript_id : NM_198932.2

name	Pou2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431251 GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 1 transcript_id : NM_011137.2

name	Pou2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431255 GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 1 transcript_id : NM_198933.2

name	Pou2f1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114431257 GeneID:18986 MGI:101898
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, transcription factor 1 transcript_id : NM_198934.2

name	Dusp27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368935 GeneID:240892 MGI:2685055
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dual specificity phosphatase 27 (putative) transcript_id : NM_001033344.2

name	Gpa33 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:11037799 GeneID:59290 MGI:1891703
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glycoprotein A33 (transmembrane) transcript_id : NM_021610.1

name	Mael (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129866 GeneID:98558 MGI:2138453
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : maelstrom homolog (Drosophila) transcript_id : NM_175296.4

name	LOC100039795 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149245286 GeneID:100039795
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 22 ESTs, 1 Protein product : similar to C1orf32 putative protein transcript_id : XM_001473525.1

name	Tada1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981395 GeneID:27878 MGI:1196415
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcriptional adaptor 1 (HFI1 homolog, yeast) like transcript_id : NM_030245.2

name	Pogk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31340927 GeneID:71592 MGI:1918842
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pogo transposable element with KRAB domain transcript_id : NM_175170.2

name	LOC100040287 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149245330 GeneID:100040287
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 180 ESTs, 2 Proteins product : similar to ubiquinol-cytochrome c reductase subunit transcript_id : XM_001475048.1

name	EG226601 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149245290 GeneID:226601 MGI:3643319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 21 Proteins product : predicted gene, EG226601 transcript_id : XM_136366.6

name	EG226604 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94364498 GeneID:226604 MGI:3643320
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs, 9 Proteins product : predicted gene, EG226604 transcript_id : XM_136368.7

name	4831428F09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351706 GeneID:240894 MGI:3606068
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4831428F09 gene transcript_id : NM_172844.2

name	C030014K22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:63003924 GeneID:226610 MGI:2443050
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030014K22 gene transcript_id : NM_175461.3

name	Uck2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370725 GeneID:80914 MGI:1931744
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uridine-cytidine kinase 2 transcript_id : NM_030724.2

name	LOC100039844 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149245294 GeneID:100039844
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100039844 transcript_id : XM_001473654.1

name	Tmco1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87116676 GeneID:68944 MGI:1921173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane and coiled-coil domains 1 transcript_id : NM_001039483.1

name	Aldh9a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115334670 GeneID:56752 MGI:1861622
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : aldehyde dehydrogenase 9, subfamily A1 transcript_id : NM_019993.3

name	Iqwd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149245319 GeneID:74106 MGI:1921356
definition	codon_start : 1 note : overriding stop codons product : IQ motif and WD repeats 1 protein_id : XP_981532.2 transl_except : (pos:complement(167281286),aa:OTHER) transl_except : (pos:complement(167281215..167281216),aa:OTHER)

name	Brp44 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312594 CCDS:CCDS15442.1 GeneID:70456 MGI:1917706
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence IEA] codon_start : 1 product : brain protein 44 protein_id : NP_081706.1

name	Sacy (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370546 GeneID:271639 MGI:2660854
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS] GO_function : GO:0004016 - adenylate cyclase activity [Evidence TAS]; GO:0005488 - binding [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0009190 - cyclic nucleotide biosynthesis [Evidence IEA] codon_start : 1 exception : mismatches in translation note : adenylate cyclase 10; testicular soluble adenylyl cyclase product : soluble adenylyl cyclase protein_id : NP_766617.1

name	Mpzl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:140969905 GeneID:68481 MGI:1915731
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; protein zero-related product : myelin protein zero-like 1 isoform a protein_id : NP_001077366.1

name	Mpzl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49457857 GeneID:68481 MGI:1915731
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2; protein zero-related product : myelin protein zero-like 1 isoform b protein_id : NP_001001880.1

name	Rcsd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781793 GeneID:226594 MGI:2676394
definition	codon_start : 1 note : isoform b is encoded by transcript variant 2 product : RCSD domain containing 1 isoform b protein_id : NP_001033935.1

name	Rcsd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84781800 GeneID:226594 MGI:2676394
definition	codon_start : 1 note : isoform a is encoded by transcript variant 1 product : RCSD domain containing 1 isoform a protein_id : NP_848708.2

name	Creg1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753520 GeneID:433375 MGI:1344382
definition	GO_component : GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0008134 - transcription factor binding [Evidence IDA] GO_process : GO:0001558 - regulation of cell growth [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IDA] codon_start : 1 product : cellular repressor of E1A-stimulated genes 1 protein_id : NP_035934.1

name	Cd247 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13624303 CCDS:CCDS15443.1 GeneID:12503 MGI:88334
definition	GO_component : GO:0042105 - alpha-beta T cell receptor complex [Evidence IDA]; GO:0005737 - cytoplasm [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS]; GO:0042101 - T cell receptor complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI] [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA] codon_start : 1 note : CD3-zeta/eta product : CD3 antigen, zeta polypeptide protein_id : NP_112439.1

name	Pou2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431254 GeneID:18986 MGI:101898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform Z is encoded by transcript variant 2; ubiquitous transcription factor product : POU domain, class 2, transcription factor 1 isoform Z protein_id : NP_945150.2

name	Pou2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431252 GeneID:18986 MGI:101898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform A is encoded by transcript variant 1; ubiquitous transcription factor product : POU domain, class 2, transcription factor 1 isoform A protein_id : NP_035267.2

name	Pou2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431256 CCDS:CCDS15444.1 GeneID:18986 MGI:101898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform L is encoded by transcript variant 3; ubiquitous transcription factor product : POU domain, class 2, transcription factor 1 isoform L protein_id : NP_945151.2

name	Pou2f1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114431258 GeneID:18986 MGI:101898
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] [Evidence ISS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0016481 - negative regulation of transcription [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform B is encoded by transcript variant 4; ubiquitous transcription factor product : POU domain, class 2, transcription factor 1 isoform B protein_id : NP_945152.2

name	Dusp27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370021 CCDS:CCDS15446.1 GeneID:240892 MGI:2685055
definition	GO_function : GO:0008138 - protein tyrosine/serine/threonine phosphatase activity [Evidence IEA] GO_process : GO:0006470 - protein amino acid dephosphorylation [Evidence IEA] codon_start : 1 exception : mismatches in translation product : dual specificity phosphatase 27 (putative) protein_id : NP_001028516.1

name	Gpa33 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:11037800 CCDS:CCDS15447.1 GeneID:59290 MGI:1891703
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] codon_start : 1 note : A33 antigen product : glycoprotein A33 (transmembrane) protein_id : NP_067623.1

name	Mael (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424966 CCDS:CCDS15448.1 GeneID:98558 MGI:2138453
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : maelstrom homolog protein_id : NP_780505.1

name	LOC100039795 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149245287 GeneID:100039795
definition	codon_start : 1 product : similar to C1orf32 putative protein protein_id : XP_001473575.1

name	Tada1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313610 CCDS:CCDS15450.1 GeneID:27878 MGI:1196415
definition	codon_start : 1 product : SPT3-associated factor 42 protein_id : NP_084521.1

name	Pogk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424772 GeneID:71592 MGI:1918842
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA] codon_start : 1 exception : mismatches in translation product : pogo transposable element with KRAB domain protein_id : NP_780379.1

name	LOC100040287 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149245331 GeneID:100040287
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475098.1

name	EG226601 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149245291 GeneID:226601 MGI:3643319
definition	codon_start : 1 product : flavin-containing monooxygenase 13 protein_id : XP_136366.6

name	EG226604 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82883108 GeneID:226604 MGI:3643320
definition	codon_start : 1 product : flavin-containing monooxygenase 12 protein_id : XP_136368.5

name	4831428F09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370272 CCDS:CCDS15453.1 GeneID:240894 MGI:3606068
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0031227 - intrinsic to endoplasmic reticulum membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IEA] GO_function : GO:0004499 - dimethylaniline monooxygenase (N-oxide-forming) activity [Evidence IEA]; GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]; GO:0050660 - FAD binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : hypothetical protein LOC240894 protein_id : NP_766432.1

name	C030014K22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63003925 GeneID:226610 MGI:2443050
definition	codon_start : 1 product : hypothetical protein LOC226610 protein_id : NP_780670.2

name	Uck2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507680 CCDS:CCDS15455.1 GeneID:80914 MGI:1931744
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004849 - uridine kinase activity [Evidence IEA] GO_process : GO:0009058 - biosynthesis [Evidence IEA] codon_start : 1 function : phosphorylates uridine and cytidine to uridine monophosphate and cytidine monophosphate, respectively note : uridine monophosphate kinase 2; cytidine monophosphokinase 2 product : uridine-cytidine kinase 2 protein_id : NP_109649.1

name	LOC100039844 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149245295 GeneID:100039844
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473704.1

name	Tmco1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87116677 CCDS:CCDS15456.1 GeneID:68944 MGI:1921173
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : putative membrane protein protein_id : NP_001034572.1

name	Aldh9a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115334671 GeneID:56752 MGI:1861622
definition	GO_component : GO:0005829 - cytosol [Evidence IDA] GO_function : GO:0047105 - 4-trimethylammoniobutyraldehyde dehydrogenase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IDA] GO_process : GO:0009437 - carnitine metabolism [Evidence IDA] codon_start : 1 note : aldehyde dehydrogenase 9A product : aldehyde dehydrogenase 9, subfamily A1 protein_id : NP_064377.2

name	LOC240895 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:240895
definition	number : 1 pseudo : _no_value

name	LOC240895 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:240895
definition	number : 2 pseudo : _no_value

name	LOC240895 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:240895
definition	number : 3 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:92704
definition	standard_name : D1S2526

name	(CDS detail)
type	STS
link
xref	UniSTS:235276
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:234256
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:128907
definition	standard_name : D1Mit539.1

name	(CDS detail)
type	STS
link
xref	UniSTS:128906
definition	standard_name : D1Mit539

name	(CDS detail)
type	STS
link
xref	UniSTS:142258
definition	standard_name : D1Mit539.2

name	(CDS detail)
type	STS
link
xref	UniSTS:165119
definition	standard_name : AI844869

name	(CDS detail)
type	STS
link
xref	UniSTS:158880
definition	standard_name : AA755314

name	(CDS detail)
type	STS
link
xref	UniSTS:128481
definition	standard_name : D1Mit144

name	(CDS detail)
type	STS
link
xref	UniSTS:124852
definition	standard_name : J03297

name	(CDS detail)
type	STS
link
xref	UniSTS:271854
definition	standard_name : PMC197251P5

name	(CDS detail)
type	STS
link
xref	UniSTS:178503
definition	standard_name : J04967

name	(CDS detail)
type	STS
link
xref	UniSTS:119905
definition	standard_name : RH94658

name	(CDS detail)
type	STS
link
xref	UniSTS:178499
definition	standard_name : AW552088

name	(CDS detail)
type	STS
link
xref	UniSTS:141281
definition	standard_name : Cd3z

name	(CDS detail)
type	STS
link
xref	UniSTS:163269
definition	standard_name : L03353

name	(CDS detail)
type	STS
link
xref	UniSTS:158879
definition	standard_name : X68362

name	(CDS detail)
type	STS
link
xref	UniSTS:108991
definition	standard_name : Pou2f1

name	(CDS detail)
type	STS
link
xref	UniSTS:273111
definition	standard_name : PMC321444P1

name	(CDS detail)
type	STS
link
xref	UniSTS:234259
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:185456
definition	standard_name : BB116197

name	(CDS detail)
type	STS
link
xref	UniSTS:178504
definition	standard_name : AU019877

name	(CDS detail)
type	STS
link
xref	UniSTS:128763
definition	standard_name : D1Mit401

name	(CDS detail)
type	STS
link
xref	UniSTS:108988
definition	standard_name : G49232

name	(CDS detail)
type	STS
link
xref	UniSTS:167275
definition	standard_name : C86954

name	(CDS detail)
type	STS
link
xref	UniSTS:234261
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:164137
definition	standard_name : AI852300

name	(CDS detail)
type	STS
link
xref	UniSTS:234258
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:108987
definition	standard_name : G49231

name	(CDS detail)
type	STS
link
xref	UniSTS:158881
definition	standard_name : C79449

name	(CDS detail)
type	STS
link
xref	UniSTS:167262
definition	standard_name : RH126668

name	(CDS detail)
type	STS
link
xref	UniSTS:125080
definition	standard_name : MHAa21c1.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128915
definition	standard_name : D1Mit57.1

name	(CDS detail)
type	STS
link
xref	UniSTS:116691
definition	standard_name : D1Mit57

name	(CDS detail)
type	STS
link
xref	UniSTS:124377
definition	standard_name : 40.MMHAP67FLF4.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128710
definition	standard_name : D1Mit351

name	(CDS detail)
type	STS
link
xref	UniSTS:178500
definition	standard_name : AU018180

name	(CDS detail)
type	STS
link
xref	UniSTS:158877
definition	standard_name : AI481316

name	(CDS detail)
type	STS
link
xref	UniSTS:234260
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:162488
definition	standard_name : RH125730

name	(CDS detail)
type	STS
link
xref	UniSTS:210538
definition	standard_name : RH136556

name	(CDS detail)
type	STS
link
xref	UniSTS:124524
definition	standard_name : 44.MMHAP10FG5.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:128762
definition	standard_name : D1Mit400

name	(CDS detail)
type	STS
link
xref	UniSTS:128482
definition	standard_name : D1Mit145

name	(CDS detail)
type	STS
link
xref	UniSTS:143025
definition	standard_name : AA109065

name	(CDS detail)
type	STS
link
xref	UniSTS:207245
definition	standard_name : AU022572

name	LOC665409 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149245283 GeneID:665409
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 2 Proteins product : similar to RNA polymerase II transcription factor SIII p18 subunit pseudo : _no_value transcript_id : XR_031258.1

name	LOC622102 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149245341 GeneID:622102
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 487 ESTs, 13 Proteins product : similar to ribosomal protein L7a pseudo : _no_value transcript_id : XR_032092.1

clone name	MSMg01-511P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-289E20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-339P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144L02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-335N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-486P08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-462N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-529F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-491G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-450I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436O15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-107A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-217O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382E09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-192P01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-427I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-509D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-441B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-163E06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-067J08
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-438I18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-471G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-123M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518G13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-504P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490L09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173N04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302M06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541N22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-478K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483E11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052P13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-273P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-095F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-543I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459G13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-081D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229G15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-347K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073L04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218H08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-327M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346D21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250F13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-096B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-083D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009M14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006J24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-110N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330F01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299O11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338G22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-265F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-051N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-059G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253J24
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-473D08.T7 (MSMg01no473_d08.b1)	MSMg01-473D08.TJ (MSMg01no473_d08.g1)
ACC	AG555561	AG555562
length	781	769
length of high quality (start - end)	242 (78 - 319)	533 (72 - 604)
definition	CHROMAT_FILE: MSMg01no473_d08.b1 PHD_FILE: MSMg01no473_d08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:10 2005	CHROMAT_FILE: MSMg01no473_d08.g1 PHD_FILE: MSMg01no473_d08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:51:11 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGTACCTCGCCGGA ATTCTCTCTCTCTTACCATCACTATCGCTCTCTCTCTCTCTCTCTCTCTC TCTCTCCCTCTCTCTCTCCCTCTCTCCCTCTCTCTCTCCCTCTCCTCTCC CTCTCTCCTCTTGAGAATTCTCTGAGGAAAAGCTAGGGCACAGGAAGACG ATAAATCAACAAACAGGGGGAACAGAGCTCTCACAGAAACCAAATTTCCT AGCCTCTTGATTTTAGACTTCTAGCCTTCAACAGTATGGAAATCCATCAG GACCCAGGTATTACTGCATGTTTTTTTTTTCTTACAACACACCCTCTTTG CTCCTAGCCAGCTTCTAGTATCCAAGCCACATGGGATACTGGCACGTAAC CTAACCAGGGCAAGGCGAGTGTCTGTTAGCTTTATATTGTACATCAATTC TAAAGGGTCCGTGTACAGAACTGCTTCAAAATTACTGTGATCAGCGTAAT CATTTGTGTAGTTTCCCTTGAAACCCTATTCTTACAATGTATTCAATGTA TTATCACACTGTTCTTATGATCCTCGATGTAAACCTTATTTCCTTCCTCA TACATTACATATAAAACTCTCTCTTCCTGACTCCCTATTTTTATCGTCTG CTACCATCACTTACATTGGTATTTTTTATTATAAGGCCTGTCGGCATCAT CATTTCTCCAAGTGGTCTTTCTTTTCTACTGATAATTAAAACTCTATATG TTATGAATCTTCTCAATTTTTTGCTTTCCCC	AATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXTCACCTGAGAAATACCGAATGGCAGAGAA GCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCA AAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAA AATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACT CCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCTG TCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGTATCCAGCA ATACCCCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGA CACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCT GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGG TACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTAT GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGG TAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGA TATTATCCCAAAACCTATGTATATCCCAGATATCTGATACTATATGCTAA ACACTTGAAATTCATGATAAATGATGACTGGTGCGGTGGACCTTTTGCCC CTCCTTAGAAGCGGGAAAT
quality values	Open. Hide. 9 10 10 9 9 14 19 30 30 32 23 23 16 16 19 30 30 28 17 17 18 23 22 35 25 14 13 15 9 7 7 6 6 6 6 6 6 6 6 9 9 9 10 10 9 9 9 11 21 21 30 30 37 33 59 59 59 59 27 27 9 6 6 6 6 6 6 6 6 8 8 8 8 8 9 9 9 9 12 22 36 47 47 59 59 59 59 59 48 48 48 57 59 57 50 50 50 50 50 48 48 48 57 48 48 54 54 54 54 54 54 57 59 54 54 47 44 31 28 28 25 29 29 42 42 47 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 54 54 54 54 54 48 59 47 47 43 57 57 57 48 54 54 54 43 32 24 13 9 12 14 18 27 12 19 19 24 32 32 32 36 32 33 43 43 52 52 52 43 43 41 43 43 57 59 43 52 52 43 37 30 32 32 32 37 37 43 43 43 43 32 28 29 29 29 29 35 35 43 43 52 52 52 52 52 52 52 52 52 43 43 43 59 50 50 43 35 35 50 44 44 43 43 37 37 32 32 26 32 35 42 42 44 42 42 42 24 24 12 12 13 12 12 11 12 23 23 32 24 20 20 32 32 44 46 37 37 28 28 30 36 36 28 28 28 25 28 28 32 39 43 43 43 39 39 39 31 31 30 32 40 42 43 40 39 35 35 28 37 25 28 13 13 13 28 28 35 20 20 12 12 11 11 11 11 11 9 9 11 11 11 9 12 11 10 21 17 13 10 10 10 10 10 12 19 21 34 28 43 30 34 15 15 14 22 15 8 8 8 8 15 24 12 12 11 11 11 15 15 15 11 11 15 19 22 21 14 14 14 17 19 16 16 15 21 12 12 11 16 13 15 23 13 13 9 8 8 11 14 13 13 12 11 10 10 10 14 10 12 12 12 11 12 15 21 18 12 12 11 11 10 23 15 8 8 8 8 8 8 10 8 8 9 9 21 23 16 12 10 9 8 8 10 8 8 10 8 10 10 10 10 16 16 19 18 13 12 10 10 10 10 10 14 11 11 11 11 8 10 10 10 10 9 11 11 12 12 12 14 13 19 13 9 8 8 8 8 9 9 16 15 12 10 6 6 8 8 9 9 11 11 9 9 10 10 9 9 9 8 8 6 8 8 8 8 8 9 9 9 9 9 9 9 9 9 10 9 9 8 8 8 11 13 14 22 22 14 9 9 9 8 8 6 6 8 8 10 8 8 8 8 8 8 10 11 12 12 13 12 12 9 8 10 10 12 8 8 8 10 8 10 9 9 9 15 15 11 8 8 8 8 8 6 6 8 8 10 12 16 18 12 11 11 9 9 10 10 10 12 10 11 8 8 8 6 10 11 10 10 9 9 9 9 8 8 8 8 8 8 11 11 9 13 10 10 9 9 10 11 10 12 13 8 6 6 6 8 8 10 12 10 10 10 15 15 12 10 8 8 8 8 8 8 10 10 10 10 14 13 13 11 11 11 12 11 11 11 12 10 9 9 10 10 12 12 10 10 13 19 19 11 10 11 10 10 10 10 10 10 12 9 8 8 8 8 6 8 8 9 9 9 9 9 9 9 9 10 8 8 8 8 12 8 8 8 8 8 8 8 8 11 11 10 10 15 10 11 10 11 12 10 10 10 8 8 8 8 10 10 12 15 12 12 9 7 7 8 8 8 8 6 6 6 6 6 8 8 13 10 10 14 13 13 8 9 9 9 8 8 6 6 10 8 8 10 10 10 10 10 15 16 13 12 10 10	Open. Hide. 6 6 6 8 6 6 8 19 19 14 15 15 24 29 37 37 43 37 37 37 37 37 25 25 25 25 30 37 23 18 9 9 11 9 9 9 11 11 20 20 39 35 31 20 23 12 11 11 19 21 41 48 48 50 50 43 27 17 19 10 9 9 11 11 11 10 15 23 29 33 33 44 47 47 47 38 57 57 57 57 37 37 40 40 40 42 53 50 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 50 51 51 50 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 57 57 57 57 57 57 57 57 57 68 68 68 59 59 59 59 59 59 59 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 59 57 57 68 68 68 68 68 57 57 57 57 57 57 68 59 68 59 59 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 52 52 52 43 43 39 35 43 47 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 68 62 62 62 62 62 62 62 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 59 57 57 57 57 59 57 44 43 35 35 43 43 52 57 57 57 57 57 57 57 59 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 54 57 57 57 57 59 59 57 57 59 57 57 57 52 52 52 57 57 57 57 57 57 54 57 57 43 43 43 44 43 37 37 44 43 37 37 44 44 48 54 54 57 57 44 43 37 39 33 36 32 30 30 32 37 39 57 57 54 54 44 57 43 43 43 44 43 43 47 57 48 36 37 23 28 28 37 36 47 57 42 42 30 37 42 39 39 43 43 43 42 48 42 42 39 40 48 43 43 43 43 37 37 28 33 33 32 28 28 37 37 46 41 41 41 39 39 28 26 26 31 39 39 39 41 33 33 33 33 31 31 37 37 37 27 25 25 27 32 37 39 37 37 37 37 16 13 14 11 11 15 32 36 36 37 34 32 23 23 23 31 31 31 30 24 28 28 28 34 34 34 23 19 18 24 10 10 10 11 13 18 20 20 16 19 15 14 14 15 15 17 12 11 11 11 10 10 10 13 13 15 28 18 14 12 15 15 13 15 16 10 10 10 13 15 19 17 16 10 11 8 8 8 8 8 8 10 10 8 12 9 9 13 13 9 9 9 9 11 21 10 10 9 9 10 8 10 8 8 8 8 11 13 6 6 8 6 9 9 9 9 11 11 11 10 10 8 8 8 12 12 8 10 8 8 11 15 8 8 8 10 8 11 10 10 10 9 10 10 10 10 11 8 8 8 8 8 8 9 9 10 13 13 10 10 9 10 8 8 8 8 8 8 8 10 10 11 10 9 9 12 12 12 14 12 12 14 9 8 8 8 8 8 6 8 6 6 8 8 16 13 15 15

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no473_d08.b1 MSMg01no473_d08.b1 CHROMAT_FILE:
MSMg01no473_d08.b1 PHD_FILE: MSMg01no473_d08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:10 2005
         (242 letters)



>mm_chr1_168292494_168293135
          Length = 642

 Score =  431 bits (223), Expect = e-125
 Identities = 236/241 (97%), Gaps = 2/241 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctctctctctctctctctctctctctccctctctctctccctctctcc--ctctctct 58
           ||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||
Sbjct: 199 ctctctctctctctctctctctctctccccctctctctctccctctctccctctctctct 258

                                                                       
Query: 59  ctccctctcctctccctctctcctcttgagaattctctgaggaaaagctagggcacagga 118
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 259 ctccctctcctctccctctctcctcttgagaattcactgaggaaaagctagggcacagga 318

                                                                       
Query: 119 agacgataaatcaacaaacagggggaacagagctctcacagaaaccaaatttcctagcct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 agacgataaatcaacaaacagggggaacagagctctcacagaaaccaaatttcctagcct 378

                                                                       
Query: 179 cttgattttagacttctagccttcaacagtatggaaatccatcaggacccaggtattact 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 379 cttgattttagacttctagccttcaacagtatggaaatccatcaggacccaggcattact 438

            
Query: 239 g 239
           |
Sbjct: 439 g 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 16
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information