Query= MSMg01no473_h16.b1 MSMg01no473_h16.b1 CHROMAT_FILE:
MSMg01no473_h16.b1 PHD_FILE: MSMg01no473_h16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:34 2005
(531 letters)
>mm_chr1_90519699_90520629
Length = 931
Score = 913 bits (472), Expect = 0.0
Identities = 512/532 (96%), Gaps = 13/532 (2%)
Strand = Plus / Plus
Query: 1 gtccccagatgtcagagatggcgatgaggaggtgagaggtcagaacacaggcatgctcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtccccagatgtcagagatggcgatgaggaggtgagaggtcagaacacaggcatgctcct 260
Query: 61 gggagcataagtctgagatggccatctgcgtggctttgagcacgtgcagaatggctgtag 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggagcatacgtctgagatggccatctgcgtggctttgagcacgtgcagaatggctgtag 320
Query: 121 ttttgttctcccactgggatgcaggaagagaacgcatcctctggaccagctcagcatctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgttctcccactgggatgcaggaagagaacgcatcctctggaccagctcagcatctt 380
Query: 181 acaggaatacttttctcattatctagagcgagcaaggagggtaaaatgtatgactccggt 240
|||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 acaggaatacttttctcattatctagag-----------ggtaaaatgtatgactccggt 429
Query: 241 tctgttccgtc-gtgactgaatgtccttaacagaaggatcttaaaagcaacaggccagct 299
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tctgttccg-ctgtgactgaatgtccttaacagaaggatcttaaaagcaacaggccagct 488
Query: 300 ctccgccagccaggagcacccaactagtagagattttaccagaaattacgaatgcagacc 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 489 ctccgccagccaggagcacccaactagtagagattttaccagaaattatgaatgcagacc 548
Query: 360 actgattgtgcccctggtggttccagccagaaacaattacccacttggctcattaagact 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 actgattgtgcccctggtggttccagccagaaacaattacccacttggctcattaagact 608
Query: 420 actaacaaatggtcaattgtctccacaatcaaccaagagcagggacggttgcttgtgact 479
|||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 609 actaacaaatggccaattgtctccacaatcagccatgagcagggacggttgcttgtgact 668
Query: 480 gtgaacgggggactttgaagacagactggcaatggtagaaaagaaattcaaa 531
||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 atgaaccggggactttgaagacagactggcaatggtagaaaagaaattcaaa 720
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no473_h16.g1 MSMg01no473_h16.g1 CHROMAT_FILE:
MSMg01no473_h16.g1 PHD_FILE: MSMg01no473_h16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:51:34 2005
(429 letters)
>mm_chr1_90706033_90706861
Length = 829
Score = 806 bits (417), Expect = 0.0
Identities = 426/429 (99%)
Strand = Plus / Minus
Query: 1 aaaacaacccacaagggatgctcttgcagtgctgctgctggccagggtcttctgagggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aaaacaacccacaagggatgctcttgcagtgctgctgctggccagggtcttctgagggct 403
Query: 61 aagcaaatgggatatagcttttaatatgcatgcttttcagcttaggttaggttggctggg 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 402 aagcaaatgggatatagcttttaatatgcatgcttttcagcttaggctaggttggctggg 343
Query: 121 atactaacccatccttagtcaaggaacatctgttggtcagatttcttccacaatgcttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 atactaacccatccttagtcaaggaacatctgttggtcagatttcttccacaatgcttga 283
Query: 181 ccttggattcttggttcaaagcctacttggttgtgtggtgggagagtaagggctggaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccttggattcttggttcaaagcctacttggttgtgtggtgggagagtaagggctggaaag 223
Query: 241 agctgtatcaagattcacacatggggccctcaggttggctcagtgggtaaaggcacttgt 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 agctgtagcaagattcacacatggggccctcaggttggctcagtgggtaaaggcacttgt 163
Query: 301 ttatcaaacaggtgacctagttcaaccttatgggacccatggaaaggtggagggagggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttatcaaacaggtgacctagttcaaccttatgggacccatggaaaggtggagggagggag 103
Query: 361 cggactccacagatttgtcctttgacctccacggattcaagtcatgcccccacccccgta 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ccgactccacagatttgtcctttgacctccacggattcaagtcatgcccccacccccgta 43
Query: 421 cagtatgtg 429
|||||||||
Sbjct: 42 cagtatgtg 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space: 344400
Effective search space used: 344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
