BAC Information

Click to search

BAC

Clone NameMSMg01-473N12
Chromosome1 (Build37)
Map Location 65,850,850 - 65,851,341
singlet/doubletsinglet
Overlap genenone
Upstream gene9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775
Downstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik, Rpe, 1110028C15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-473N12.T7 (MSMg01no473_n12.b1)MSMg01-473N12.TJ (MSMg01no473_n12.g1)
ACCAG556047AG556048
length765758
length of high quality
(start - end)		615 (71 - 685)538 (74 - 611)
definitionCHROMAT_FILE: MSMg01no473_n12.b1 PHD_FILE: MSMg01no473_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:05 2005CHROMAT_FILE: MSMg01no473_n12.g1 PHD_FILE: MSMg01no473_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGA
ATTCAGNGAANCTACCCAGATAAGAAAGACCTCAACTTACTTTTTCTTCA
TCATTCAGACTAAAAATAAGTCCATCAAAACTACTGTGGGTGTACATCTT
CTCACCTCAATTAAACCAAGTAAGAAAATTCCTCACTTGCAAATCTAACC
TATAAATTCCTCATTGAGACTTTCTTCCCAAACTAATAAAAAACCAAACT
ATCATAGAAACAAGCATTTAAAGTTTCTGTATCTGCTCCAAAGTTATACA
AGTGGAGTGGTATTTATTAAATATTATCTACAAAATCTTAAAACAGAGAA
TTTCAATCATTTGAGTCATGGCTTGCTTCTATCACTATCCCCCTGATAAA
TAGAGTAGTGACTTTATCCACTATGCATACTTTACTTTGGGTAGGAACAG
CCAAAACACAGGGTTTCATTGGTCTTGCTATAATTTAGGACTATAGATTT
AGCATTGGAACACTGGTCACCAGCATCTTTTATTATGCCTTCTGTCAATG
TTGCTAAAGTTCTTGGTCTGTCCAGCAGAAGGAAGAAGACCTATGTTTCC
TCTTGCTTCTTTTATCACCATCTCCAGCACCTGACCACAAAGTAAGCATC
TCAAATCAGGTCAAGAATATTGGAACCCCAATAACTTATAAGGAAATTAA
ATCAATAAAAAATTTCCCCATCAGGNGAGAAATTGATGCATTCCTTGATT
CAGGGAAATGATGCA

NCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGATCCACTTAGACTTGAGCTTTGT
ACATCTTCTGCTTTCCATCTTCTGCTATCTTCTTCAATTTATTGTTACTA
CATTTACAAATTATTGATATTCTTCAAAAGCTTGATATTACATATAAGAC
TTTCACTTGCTTGGCTAGAGCTATTCCATGATAGTTTATATTATTTGAGG
CTGTTTTAAGGGTGTTCTTTCCCTTATTTTATTTTTTAGTCCATTTGTCA
TTTATATATAGCAGGGCTACCTAGTTTTTGTGAGTTAGTTTTATATTCAT
CTACTTTGCTGAAAGTTCTTTAGCATCTGTAGGACTTCTCTAGTGGAATT
TGGGGTCACTTCTGTGTACTATTATAAGGATACTTTGACTTCTTCCTTTC
TAATTTGTATTCTCTTGATATTCTTTAATTGTCTTATTGCTCTAGCTAAG
GCTTCAAGTACTATATTGAATAAATGTGAAGAGAGTGAACAACCTCATCT
TGTTCCTGATTTTAGTGGAGTTGATTTGAGTTTCTCTCCATTTAATTTGA
AGTTGGCTATAGACTTGCTATAAACTACCTTTATTATGTTTGTATGAATT
CATAGTCTGCCTAAAGTACAGGCATGACTGTCACTACTGCCTTTTATTTT
GAAGCCTAAATATTTGAAGACAATATGACATATTATTTTTAATCTAAACC
TTTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no473_n12.b1 MSMg01no473_n12.b1 CHROMAT_FILE:
MSMg01no473_n12.b1 PHD_FILE: MSMg01no473_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:05 2005
         (615 letters)



>mm_chr1_65850327_65851341
          Length = 1015

 Score =  928 bits (480), Expect = 0.0
 Identities = 489/492 (99%)
 Strand = Plus / Minus

                                                                        
Query: 124  tctaacctataaattcctcattgagactttcttcccaaactaataaaaaaccaaactatc 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 tctaacctataaattcctcattgagactttcttcccaaactaataaaaaaccaaactatc 956

                                                                        
Query: 184  atagaaacaagcatttaaagtttctgtatctgctccaaagttatacaagtggagtggtat 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955  atagaaacaagcatttaaagtttctgtatctgctccaaagttatacaagtggagtggtat 896

                                                                        
Query: 244  ttattaaatattatctacaaaatcttaaaacagagaatttcaatcatttgagtcatggct 303
            |||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895  ttattaaaaagaatctacaaaatcttaaaacagagaatttcaatcatttgagtcatggct 836

                                                                        
Query: 304  tgcttctatcactatccccctgataaatagagtagtgactttatccactatgcatacttt 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  tgcttctatcactatccccctgataaatagagtagtgactttatccactatgcatacttt 776

                                                                        
Query: 364  actttgggtaggaacagccaaaacacagggtttcattggtcttgctataatttaggacta 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775  actttgggtaggaacagccaaaacacagggtttcattggtcttgctataatttaggacta 716

                                                                        
Query: 424  tagatttagcattggaacactggtcaccagcatcttttattatgccttctgtcaatgttg 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715  tagatttagcattggaacactggtcaccagcatcttttattatgccttctgtcaatgttg 656

                                                                        
Query: 484  ctaaagttcttggtctgtccagcagaaggaagaagacctatgtttcctcttgcttctttt 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655  ctaaagttcttggtctgtccagcagaaggaagaagacctatgtttcctcttgcttctttt 596

                                                                        
Query: 544  atcaccatctccagcacctgaccacaaagtaagcatctcaaatcaggtcaagaatattgg 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595  atcaccatctccagcacctgaccacaaagtaagcatctcaaatcaggtcaagaatattgg 536

                        
Query: 604  aaccccaataac 615
            ||||||||||||
Sbjct: 535  aaccccaataac 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |