Query= MSMg01no473_o16.b1 MSMg01no473_o16.b1 CHROMAT_FILE:
MSMg01no473_o16.b1 PHD_FILE: MSMg01no473_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:11 2005
(246 letters)
>mm_chr1_121296199_121296845
Length = 647
Score = 416 bits (215), Expect = e-121
Identities = 239/247 (96%), Gaps = 1/247 (0%)
Strand = Plus / Plus
Query: 1 cctaagggctgagattgaaggtgtgcaccactatgcgtgttaagca-ttttgtgtatcag 59
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cctaagggctgagattgaaggtgtgcaccactatgcgtgttaagcatttttgtgtatcag 260
Query: 60 tgcacacatgtatgtggatgtcagaggacagtccagctcttacacaattctgaggattct 119
|||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 261 tgcacatatgtatgtggatgtcagaggagagtccagctctcacacaattctgaggattct 320
Query: 120 tgggtcactgggctcaggaggcaaatgccattacagcctccctcttctttcatctctctt 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 tgggtcactgggctcaggaggcaaataccattacagcctccctcttctttcatctctctt 380
Query: 180 tcttcctgcatgtgaatgtgtgtgagtacatgagagtgtgcatatgtatgtgtgtaggcc 239
||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 381 tctccctgcatgtgaatgtgtgtgagtacatgcgcgtgtgcatatgtatgtgtgtaggcc 440
Query: 240 agaggtc 246
|||||||
Sbjct: 441 agaggtc 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space: 151206
Effective search space used: 151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no473_o16.g1 MSMg01no473_o16.g1 CHROMAT_FILE:
MSMg01no473_o16.g1 PHD_FILE: MSMg01no473_o16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:11 2005
(492 letters)
>mm_chr1_121464210_121465100
Length = 891
Score = 890 bits (460), Expect = 0.0
Identities = 484/492 (98%), Gaps = 1/492 (0%)
Strand = Plus / Minus
Query: 1 atcagacattactgtcttaaacattacctcagaaatgatgggtaaaactgacctctttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 atcagacattactgtcttaaacattacctcagaaatgatgggtaaaactgacctctttag 632
Query: 61 ataaacatttggatttccttcttaaactcttcatttcatttaaggagaaataggatccaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ataaacatttggatttccttcttaaactcttcatttcatttaaggagaaataggatccaa 572
Query: 121 tgatacagctaatcattttctttttatcatgcaaatttgaaaaaaatgctggcattgaat 180
|||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 571 tgatacagctaaccattttctttttatcatgtaaatctg-aaaaaatgctggcattgaat 513
Query: 181 ctttgtgaattttgtctgtagtgggtaacacgctttagtgtcttaagcaattaatagctt 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 512 ctttgtgaattttgtctgtagtgggtaacacgctttagcgtcttaagcaattaatagctt 453
Query: 241 tgtgataagaagatgtaccatgtatattctgaacttgtcttacattattggtctggctac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 tgtgataagaagatgtaccatgtatattctgaacttgtcttacattattggtctggctac 393
Query: 301 tggataggactgaactagatgtgatattggtaaaatataattagcatcttatttgaattg 360
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct: 392 tggataggactgaactagatgtaatattggtaaaatatcattagcatcttatttgaattg 333
Query: 361 aagtgagttgatttttctatttttagaagaataaaagataaacttgttacttgaatatcc 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aagggagttgatttttctatttttagaagaataaaagataaacttgttacttgaatatcc 273
Query: 421 tttcaaatatttagtgtttcattatcatgatttaattttcttaggttacaagagaagata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tttcaaatatttagtgtttcattatcatgatttaattttcttaggttacaagagaagata 213
Query: 481 gtttattaactc 492
||||||||||||
Sbjct: 212 gtttattaactc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
