BAC Information

Click to search

BAC

Clone NameMSMg01-474B12
Chromosome1 (Build37)
Map Location 193,315,029 - 193,315,267
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3, Nenf, 2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044
Downstream geneDtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474B12.T7 (MSMg01no474_b12.b1)MSMg01-474B12.TJ (MSMg01no474_b12.g1)
ACCAG556237AG556238
length724735
length of high quality
(start - end)
280 (326 - 605)284 (318 - 601)
definitionCHROMAT_FILE: MSMg01no474_b12.b1 PHD_FILE: MSMg01no474_b12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:25 2005CHROMAT_FILE: MSMg01no474_b12.g1 PHD_FILE: MSMg01no474_b12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAACCG
CGGAATTCCAGCTTATAGCAGGTCCCTATGCTGTGCATAATCTCTTAACA
GCTGGAGAAGACTCTGTTTGCACCATCCTATAGACAAGTAAACAGAATTA
AATGTCTTTCTTGACACCAAACAACTAACATTTCATCACCCTGGGACCTA
ACTCAGTTCTTGATTAACTAGAAATGATTCTGCCTGGATGCCATCATGCT
GGGAGGGTAAGTGGAGAGTGACATTCCTCAATTTCAACATACTGGCTTAG
AGCACCTGGCAGCACTCCTTTGTTGCTCGAGGGCAAAGGAAAGCTCGACC
TTACAGAATGGCTGGGAAACTTCAATGTTGAAATAATTATTAATAAATCA
CCACGGCAGCTTCACTACCTGTCTCAGTGGTTTATGCTGCCCAATGAAAG
ACACACATATTTGAATATGCCTTAAACAGCACAGTAGCTGGACCACTGCC
TGACCTCCACTGCTGATAGAATCTACCTCCCGCCGATAATTCCAAGTTAC
TACTTATTAAATTCCTTGTTCTATCTTGGCTGCTCTACATCCAGTTGGGC
AGCCCTCTGGGCCCCGCTCTCCCGGCTCCATCACATGGCGGCTATGCCTC
TCTGTCCTGTGCTCCTCACAGACATCTCTCCTCTCCTTCAATCTCCCCGA
ATGTTGGATGTCCTCCTTCTTCCN
ATTGAXXXXXXXXXXXXXXXXXXXXXXXXTTTCATACTCCTTAGGTGAAC
TATAGATGGCAACAACCACTTCAGNATGCTGCCTGATAGCCAGGGCACAT
CCTTGGACATCTTCACCAGCCACACTCACCCCCTTCCTGTGACACCTGCT
AAGCAGATTGCTAGCCTTGGGTCCACCTTCCCAGGCCTTCTGCTTCTATG
CCAAGGACATGGAACCCCCTTTAGGTCTTCATCGCTGACTCTCTTTAGGG
TCTGTGGGATCAGTGAAGCAAAGAGTCAGTCCTGGTGTTACTGGTGGTGG
TCACAGTTGCATTGTGACCAGGGACAGCTCCAGGGTGGACAAGGTATTGT
TTTCTGACAAGAGGCTTGAGCAAATGTGTGAATATGCTGAGAGTAATACA
GACAATCCTCTTACTGTCGGGGTTACAGAGAGTAAGAAGAGAAGGCTAAG
ACACACCCTATGTGTGCGCGCACACACACACTTATGTGCTTTCAAATGTT
CTCCACAGAAAGGACAAATTTGAAATAACCAAAAGTTAGCAACAACGTGC
AGGGTTCATACCACATGTAGGGATACACTAAGGCACCATGATGATAGCAC
AAAAGCCCGGAAGGCAGGAAGGATGGGTAGATTAATGTTTCTTTCTTTAT
ATGCGGAATGCTATAACCATATTTTAAGAAATTACCTTGGAAAGTTCCCA
AGCATATTCCAAATTTCTAGGGAAACTACCGAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_b12.g1 MSMg01no474_b12.g1 CHROMAT_FILE:
MSMg01no474_b12.g1 PHD_FILE: MSMg01no474_b12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:25 2005
         (284 letters)



>mm_chr1_193314783_193315467
          Length = 685

 Score =  327 bits (169), Expect = 5e-94
 Identities = 234/285 (82%), Gaps = 47/285 (16%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagggacagctccagggtggacaaggtattgttttctgacaagaggcttgagcaaatgt 60
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 247 ccagggacagctccagggtggacaaggtattggcttctgacaagaggcttgagcaaatgt 306

                                                                       
Query: 61  gtgaatatgctgagagtaatacagacaatcctcttactgtcggggttacagagagtaaga 120
           |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 307 gtgaatatgctgagagaaatacagacaatcctcttattgtcggggttacagagagtaaga 366

                                                                       
Query: 121 agagaaggctaagacacaccctatgtgtgcgcgcacacacacacttatgtgctttcaaat 180
           |||||||||||                                    |||||||||    
Sbjct: 367 agagaaggcta------------------------------------tgtgctttc---- 386

                                                                       
Query: 181 gttctccacagaaaggacaaatttgaaataaccaaaagttagcaacaacgtgcagggttc 240
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ------cacagaaaggacaaatttgaaataaccaaaagttagcaacaacgtgcagggttc 440

                                                        
Query: 241 ataccacatgtagggat-acactaaggcaccatgatgatagcaca 284
           ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ataccacatgtagggattacactaaggcaccatgatgatagcaca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space:   185900
Effective search space used:   185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)