BAC Information

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BAC

Clone NameMSMg01-474H22
Chromosome1 (Build37)
Map Location 89,805,935 - 89,806,439
singlet/doubletsinglet
Overlap genenone
Upstream gene4930429A22Rik, EG620213, LOC208256, Akp5, Alpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag
Downstream geneUsp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474H22.T7 (MSMg01no474_h22.b1)MSMg01-474H22.TJ (MSMg01no474_h22.g1)
ACCAG556544AG556545
length732741
length of high quality
(start - end)		505 (79 - 583)468 (80 - 547)
definitionCHROMAT_FILE: MSMg01no474_h22.b1 PHD_FILE: MSMg01no474_h22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:58 2005CHROMAT_FILE: MSMg01no474_h22.g1 PHD_FILE: MSMg01no474_h22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTACGGTTTCAAGAAGGCTCATTGGACCAATACTGTAAGT
AAAACACCTTGTGGATTGCCTAAAGTTGTAAGTGTCCATCTCTGTTAGCC
AGTGTTGTTATCTGGCACCTCCACTGTCCATCAGCCACAGTGGGTGTGAA
CAACAGTATACTTTTAGTATACTTTCAGTATACTTTTAGTTTCTGTGTCT
CTAGTGTATCTCCTCTGCTTTGCTCAGGGCCTTTTTTTTTGCTCATATCC
CCAGCTCTTGTAGCTCATGCTCTTTCTTCTCAGCTTCCCATTGATCACTG
CCTGGGCTTCAGTCATCTCCTTAGCTAATTCTTCCCAGCACTGTGGCAGG
CTTTCTGACTATTTGAGTATCTTGAGCCCATGTGGAGCACTGGGTGGGAC
AGGTTTAGTGTTATCTGTAATGCCTTTTATTTCCTGGTGAGGAGTATTCT
GCTTATGTTCCTGTTGGCAGGGCTGTAGCTGCTGGAAGTTTCTCCTTATC
TCATGGGAAATTATGCACTTGTCTGAAGAGATAGAAGCAAAACAAAAGTT
CATATTTAATCAAACAGAGGTTTTTAAAAAATTTTTTTTGAGACAGGGTC
TTATTATGTAAAATAGGCTTGCCTGCAATTCCTTTGCTTCTGGAAGTATT
AAAAAAACTAGAATTAAAGGGCTTGTGCCCCC

NNNCCGAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAAAGACTCAGAAATGTCCA
CTAAAAGTCTCTGCATCTATAATGTGCTTGGGTGGTTAAACATCAGAAGA
GGGATAAGAAGGATAGAAGGTAAGAATTGATATTTAGTTGGCAAGAAGGT
GGAAAGAATGCTCAGAGAAGTTCACAGAAAAGCATGTCCCACACCAAAGG
ACACCTCGTATAGGGAAGGGTAGTGCAGACCAAACCAACTCTAATGCTGT
TCTGTGTATGGCAACTCCATGGACTCTATTTTGGTATGAGATGTAATTAC
GGCTCTATAAAGAATAATCCAGAGAGACTCATGGGTGCTGTGCTACAAGA
CTATCATCAAAAATCCTAATTAGGACCTAGCACAGCAAACACAAATACAT
GCCTAGACACATACAGTCATTCAGCATACGGCTATATACCCATCCATAAC
ATCTATTCCCCAATAATACAAACACTGTATGAGAAAAATGGCTGCCGTAG
GAAATAACACATTAAAGTTCCTAGGGTTGTTTCTGTTTTGTTGGTGAATA
ATTTGTGGTTGGACCGGATGAAACTAGGTATCCAGAACCCATTCCTATGC
CCCCTTTTTTTTTTTGTGTGTGGGGGACCCTTGCGCATGTGAAAGATTGC
GGCGTCCCGAGGTCCACACCGGCTTCCTCTCCCTTCGTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_h22.b1 MSMg01no474_h22.b1 CHROMAT_FILE:
MSMg01no474_h22.b1 PHD_FILE: MSMg01no474_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:58 2005
         (505 letters)



>mm_chr1_89805735_89806639
          Length = 905

 Score =  946 bits (489), Expect = 0.0
 Identities = 501/505 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattggaccaatactgtaagtaaaacaccttgtggattgcctaaagttgtaagtgtcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattggaccaatactgtaagtaaaacaccttgtggattgcctaaagttgtaagtgtcca 260

                                                                       
Query: 61  tctctgttagccagtgttgttatctggcacctccactgtccatcagccacagtgggtgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctctgttagccagtgttgttatctggcacctccactgtccatcagccacagtgggtgtg 320

                                                                       
Query: 121 aacaacagtatacttttagtatactttcagtatacttttagtttctgtgtctctagtgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaacagtatacttttagtatactttcagtatacttttagtttctgtgtctctagtgta 380

                                                                       
Query: 181 tctcctctgctttgctcagggcctttttttttgctcatatccccagctcttgtagctcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcctctgctttgctcagggcctttttttttgctcatatccccagctcttgtagctcat 440

                                                                       
Query: 241 gctctttcttctcagcttcccattgatcactgcctgggcttcagtcatctccttagctaa 300
           ||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctctttcacctcagcatcccattgatcactgcctgggcttcagtcatctccttagctaa 500

                                                                       
Query: 301 ttcttcccagcactgtggcaggctttctgactatttgagtatcttgagcccatgtggagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttcccagcactgtggcaggctttctgactatttgagtatcttgagcccatgtggagc 560

                                                                       
Query: 361 actgggtgggacaggtttagtgttatctgtaatgccttttatttcctggtgaggagtatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 actgggtgggacaggtttagtgttatctgtaatgccttttatttcctggtgaggaatatt 620

                                                                       
Query: 421 ctgcttatgttcctgttggcagggctgtagctgctggaagtttctccttatctcatggga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgcttatgttcctgttggcagggctgtagctgctggaagtttctccttatctcatggga 680

                                    
Query: 481 aattatgcacttgtctgaagagata 505
           |||||||||||||||||||||||||
Sbjct: 681 aattatgcacttgtctgaagagata 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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