BAC Information

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BAC

Clone NameMSMg01-474H24
Chromosome1 (Build37)
Map Location 162,300,700 - 162,476,836
singlet/doubletdoublet
Overlap geneRabgap1l
Upstream geneEG620484, Tnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp
Downstream geneGpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474H24.T7 (MSMg01no474_h24.b1)MSMg01-474H24.TJ (MSMg01no474_h24.g1)
ACCAG556548AG556549
length703643
length of high quality
(start - end)		460 (74 - 533)367 (81 - 447)
definitionCHROMAT_FILE: MSMg01no474_h24.b1 PHD_FILE: MSMg01no474_h24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:58 2005CHROMAT_FILE: MSMg01no474_h24.g1 PHD_FILE: MSMg01no474_h24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(162,476,377 - 162,476,836)(162,300,700 - 162,301,066)
sequence
NNNNTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTGTGTTTCCCGAGCTGGTTTAGGGAGAACTGTGAGAGA
GATAAAATTGTAGTTCCTCCTCTTCCTTGCTGAAGGAAGGCAATACATGT
CATCTAGTAACATGACTGCTTATAAATTAAAAACATTGATCTTGCCTCTC
CTTTGGTTTGCTTCAGATTTGTGCATTCTCTTCTTTCCTTTTTTCCAGGC
AGTATACAAGAATGAATTTTGGTAACTTAAATTCAGATTGCTGATTTTAA
AAAATTCTGCAATTCACACTGACAAATCACTACCCTCCCCCTTTCTTTCT
TTTTTTAAAAAGATGGTGCCATAGGTATCCTTCATTAGTTCGCCCTCCCT
CCCTCCCTCCCTCCTCCTCTCCTTCCTCCCTTCCTCCTTTCTTTCCTTCT
TCCCATTCCTTGAAAATGTTGAATTCTACCACTGTACTATGCAATAACTC
TTAAATGTATATTTCTGTTCTTTATATTTCCTAGACCCTTAAACTGCATT
TCTAGCTATGATCTGGATTTTTATACTTGGCCTATAGTTGCATCTTTAAC
AGATTGACTTCAAAGACATAACACACTCTCTAGTATCTTTAAACTTTCTA
CCTCTATTATCTACAGCCTTTGCTTGTTCCATTCATAGCAGGCTGCAAAA
AGG

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTCTTCTTTCCTCCTC
TCCCCTGTGTTCTTCATCTAGCATAGTGTTAGGCTGGACCCCTGTTCACC
TCTGCTCAAGCTGGGAAACCCCAACTGCCCTTCTTCCCCCAACCCCTCTT
GCACAGAAAAACAGAACAAAGGACTGGCTCTTAGAGCCCAGTACTCCATT
CTTGGCAGCTGTCCCAACCTCCTCCCCTGATGCTGCCAGCCACCCAGATC
CCCACCGAAGTGCTCAGCTCTTGACCATACTTGGGCACAGTCCCAGCTCC
TGGCTGACACATCATCACCCCTCAACTAAGATCTTTTATAAAACTTCCCC
CATCCCTAGGCCAGATGTGTGAAGTGACTTCCTCAGTCTCTTTCTCTGGG
ACTGATGAACAGGTCTGGGAGCATTGCCTAATAAACCTGCCTTTGTATCC
TTTTTAATATGGNCTAATCAGGCCTTCATCAGCATCACCCAGAAGAGAGC
AAATGCCTACCACATAAGATCTACTGGCTACTCCTGGAAACAAGGGGCTG
AAAAGAAAACTCTTCTTCCCAAGGGGCCCCCAAAACTAACCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_h24.b1 MSMg01no474_h24.b1 CHROMAT_FILE:
MSMg01no474_h24.b1 PHD_FILE: MSMg01no474_h24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:58 2005
         (460 letters)



>mm_chr1_162476318_162477177
          Length = 860

 Score =  874 bits (452), Expect = 0.0
 Identities = 458/460 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctggtttagggagaactgtgagagagataaaattgtagttcctcctcttccttgctga 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 519 agctggtttagggagaactgtgagtgagataaaattgtagttcctcctcttccttgctga 460

                                                                       
Query: 61  aggaaggcaatacatgtcatctagtaacatgactgcttataaattaaaaacattgatctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aggaaggcaatacatgtcatctagtaacatgactgcttataaattaaaaacattgatctt 400

                                                                       
Query: 121 gcctctcctttggtttgcttcagatttgtgcattctcttctttccttttttccaggcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 gcctctcctttggtttgcttcagatttgtgcattctcttctttccttttttccaggcagt 340

                                                                       
Query: 181 atacaagaatgaattttggtaacttaaattcagattgctgattttaaaaaattctgcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 atacaagaatgaattttggtaacttaaattcagattgctgattttaaaaaattctgcaat 280

                                                                       
Query: 241 tcacactgacaaatcactaccctccccctttctttctttttttaaaaagatggtgccata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tcacactgacaaatcactaccctccccctttctttctttttttaaaaagatggtgccata 220

                                                                       
Query: 301 ggtatccttcattagttcgccctccctccctccctccctcctcctctccttcctcccttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggtatccttcattagttcgccctccctccctccctccctcctcctctccttcctcccttc 160

                                                                       
Query: 361 ctcctttctttccttcttcccattccttgaaaatgttgaattctaccactgtactatgca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 ctcctttctttccttcttcccattccttgaaaatgttgaattctaccactgtactatgca 100

                                                   
Query: 421 ataactcttaaatgtatatttctgttctttatatttccta 460
           ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 99  ataactcttaaatgtatatttctgttctttacatttccta 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no474_h24.g1 MSMg01no474_h24.g1 CHROMAT_FILE:
MSMg01no474_h24.g1 PHD_FILE: MSMg01no474_h24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:59 2005
         (367 letters)



>mm_chr1_162300500_162301266
          Length = 767

 Score =  710 bits (367), Expect = 0.0
 Identities = 367/367 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctttcttctttcctcctctcccctgtgttcttcatctagcatagtgttaggctggacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atctttcttctttcctcctctcccctgtgttcttcatctagcatagtgttaggctggacc 260

                                                                       
Query: 61  cctgttcacctctgctcaagctgggaaaccccaactgcccttcttcccccaacccctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgttcacctctgctcaagctgggaaaccccaactgcccttcttcccccaacccctctt 320

                                                                       
Query: 121 gcacagaaaaacagaacaaaggactggctcttagagcccagtactccattcttggcagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcacagaaaaacagaacaaaggactggctcttagagcccagtactccattcttggcagct 380

                                                                       
Query: 181 gtcccaacctcctcccctgatgctgccagccacccagatccccaccgaagtgctcagctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcccaacctcctcccctgatgctgccagccacccagatccccaccgaagtgctcagctc 440

                                                                       
Query: 241 ttgaccatacttgggcacagtcccagctcctggctgacacatcatcacccctcaactaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgaccatacttgggcacagtcccagctcctggctgacacatcatcacccctcaactaag 500

                                                                       
Query: 301 atcttttataaaacttcccccatccctaggccagatgtgtgaagtgacttcctcagtctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcttttataaaacttcccccatccctaggccagatgtgtgaagtgacttcctcagtctc 560

                  
Query: 361 tttctct 367
           |||||||
Sbjct: 561 tttctct 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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