Query= MSMg01no474_l14.b1 MSMg01no474_l14.b1 CHROMAT_FILE:
MSMg01no474_l14.b1 PHD_FILE: MSMg01no474_l14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:16 2005
(565 letters)
>mm_chr1_188739271_188740232
Length = 962
Score = 1027 bits (531), Expect = 0.0
Identities = 553/561 (98%), Gaps = 3/561 (0%)
Strand = Plus / Minus
Query: 5 gaattcacaggggttcctcgtacctctttggagttggtggtacttaactggaaagggatg 64
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaattcacaggggaaact-gtacctctttggagttggtggtacttaactggaaagggatg 704
Query: 65 tgatttcaggaagttaatgaagcgaacaagattatgaaagacaaaaggaaaagcagagac 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 703 tgatttcaggaagttaatgaagcaaacaagattatgaaagacaaaaggaaaagcagagac 644
Query: 125 acagagcttgagacagttcaagaaaaggtgaattacaatgtttagctgtactatagacat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acagagcttgagacagttcaagaaaaggtgaattacaatgtttagctgtactatagacat 584
Query: 185 cagtaggaaaagtatcttgggaagaaattgaaggtagaacaggactataatccctattga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cagtaggaaaagtatcttgggaagaaattgaaggtagaacaggactataatccctattga 524
Query: 245 agaaatgtgggttttctaataaatatgttaatcttactcttacaagtccaaacaagcatt 304
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 523 agaaatgtgggttttctaataaatatgttaatc--actcttacaagtccaaacaagcatt 466
Query: 305 aaggagtactttctagacaaaatgtaagggtattgtttatcctgagaagggttaatgtat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 aaggagtactttctagacaaaatgtaagggtattgtttatcctgagaagggttaatgtat 406
Query: 365 cagagcattggtccttggggtgatgatgttatgtctacatggtatagaatcttcaaaagg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cagagcattggtccttggggtgatgatgttatgtctacatggtatagaatcttcaaaagg 346
Query: 425 tggggccttgcaggtaataattgggtcctttagaatgctaccgggaagggagcaagaaag 484
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 345 tggggccttgcaggtaataattgggtcctttagaatgctacctggaagggagcaagaaag 286
Query: 485 cacagctgtctctccggctcactgtgatctctgtccctcctgcacatactccagcctcga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cacagctgtctctccggctcactgtgatctctgtccctcctgcacatactccagcctcga 226
Query: 545 tgctatccaccatgccggatc 565
|||||||||||||||||||||
Sbjct: 225 tgctatccaccatgccggatc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 962
Length adjustment: 10
Effective length of query: 555
Effective length of database: 952
Effective search space: 528360
Effective search space used: 528360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_l14.g1 MSMg01no474_l14.g1 CHROMAT_FILE:
MSMg01no474_l14.g1 PHD_FILE: MSMg01no474_l14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:16 2005
(293 letters)
>mm_chr1_188547079_188547771
Length = 693
Score = 551 bits (285), Expect = e-161
Identities = 291/293 (99%)
Strand = Plus / Plus
Query: 1 gcctatggaatgcagtacagcagtgacttcacagggcacaagcaggcagaagatcccatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctatggaatgcagtacagcagtgacttcacagggcacaagcaggcagaagatcccatc 260
Query: 61 accaagccacaaccttcctgccagcactgacacaaccagtaagagtgaatggagacacag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 accaagccacaaccttcctgccagcactgacacaaccagtaagagtgaatggagacacgg 320
Query: 121 tacaagaaccaggacactcgggtgctagctaacatgggagcaacctcggatggcacagca 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tacaagaaccaggacactcgggtgctagctaatatgggagcaacctcggatggcacagca 380
Query: 181 atgcatttaaatagcagaatggtcacagggacaccctgaggggcgatggatccccgcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcatttaaatagcagaatggtcacagggacaccctgaggggcgatggatccccgcaga 440
Query: 241 gaatggaggcttctataaagaatacctcagtaggaatataggaaagtgtggag 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaatggaggcttctataaagaatacctcagtaggaatataggaaagtgtggag 493
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
