BAC Information

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BAC

Clone NameMSMg01-475C12
Chromosome1 (Build37)
Map Location 140,305,755 - 140,305,939
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600
Downstream geneNek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623, Dennd1b, Crb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475C12.T7 (MSMg01no475_c12.b1)MSMg01-475C12.TJ (MSMg01no475_c12.g1)
ACCAG557049AG557050
length778773
length of high quality
(start - end)
192 (125 - 316)187 (127 - 313)
definitionCHROMAT_FILE: MSMg01no475_c12.b1 PHD_FILE: MSMg01no475_c12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:50 2005CHROMAT_FILE: MSMg01no475_c12.g1 PHD_FILE: MSMg01no475_c12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTCAAAATTTGCGGGCGCTAAAAGAANCACTATTTTCAAAACAGCGNG
GAANNCNGNACATTACAAAAAAGGGAGCCTGTTATAGCTGTCTCGTATGA
GGCTATGCCAGTACCTGATTACTCCAGAAGTGGATGCCCACAGTCATCTA
TAAGATGGAACACGGGGCCCCCAATGGAGAAGCTAGAGAAAACACCCAAG
GAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAACAAGAGGAACTAAC
CTTTTCCCCCAGAGCTCATATCTCTAGCTACATATGTGGCAGAAGATGGC
CTAGTCGGCCATCACTGTGTAATGATTTCCCTTGGCATTGCAAACTTTAT
ATGCCCCAGTTTTGGGGAACGCCAGGACCAAGAAGCTGGAGTGGGTGGGT
AGGGGAGCAGGGCGGAGGCAGGGTATAGGGAACTTTCAGGACAGTATTTG
AAATGCATATAAAGACCATACCTAATTACAAATAAAAACACTTCTGTTTC
ATATCCTTGCTGCTCCCTTACTCCGCGCCCCTAACATTCACTGTGTTGAG
TTCCACCCACTTCCCCACCACTTTGCCCTGTCCTCTGTCCATATATCGGC
CCACCCGTCTCTGCCCTCTCCCTGCCTTTCCCCCCTTCCACCCTTTTTCC
TCTACGGCGGCCCACATTTTTTTTTCTTTCCCCAAATCCCGCCCCCTTAA
ATAACCGCGTCGCTCCCATTTTATCTAAGGTCTCCCTTTCGGTTCCCTCG
CCTTTTATTCGCCATCCTCTTTCCGTTT
TCCCTCAATGCTTTGTGAGGCCTGGGGGNCGCCTGTTCCAAACACCAGGN
GAACNATAGAATACCAGCAACAATCAATGGNTCTTCACGTTTTCAGAGAA
GACCTTTAAGAAAGTTTTCACACTGGGAGCTGGTTAAAGAATTGTGCAGA
TCTAAGAAAGCCATACAGCAATGGATGAACTTGCCCCTCCCACCTTCCGC
AAAGGACCTCCACATTGCCGCTCATAAACGGTAAGTGCAAGAAATCTTCC
ATCTGAACAATTTCACAATTCACAACTTCAGGCAGGGACAATTCCATCAA
CTGGAGAGGGATTATGCTTGGGAGATCAAGAGATTGTTTTCTTCTGTTAC
ATTTGTAACAATTTATAGATTACGCTGTAGCAACACAAATGGAAGAAGCA
GCAATTGTCTCTAGTTTTGTCTTCTATGCTGGGGTGGTAACACCGGAGAT
CTACTTATTTTTTTGTATGCATTCCCACAGTCCTTCAGAGCCCTCTGAGC
ACAACTGAAGGCGCAGGTGTTTCCCTATCTCCTTTCACGCCGTTTCTACA
AACAACCCCCCGCCTTTCTTTTCCCCCCCCCCTTCTTACCCTTCCGCCCC
GCCTCTCCCATTTTTTTCTTTCCCTTCCCACCCCCCACTATTCCCCTTTC
CTCTTTCCCTTAGTCCCACCTCCCTTCCCATTTTCTCCCCCCTTCCCTTT
TCTCTTCCCTTTCCCCCCCTTCCCCTTTATTTTTTTCCCTCTTCCCTTTC
TTTACTCTCCTCCTTTCTCGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_c12.g1 MSMg01no475_c12.g1 CHROMAT_FILE:
MSMg01no475_c12.g1 PHD_FILE: MSMg01no475_c12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:50 2005
         (187 letters)



>mm_chr1_140305555_140306141
          Length = 587

 Score =  327 bits (169), Expect = 3e-94
 Identities = 181/185 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagctggttaaagaattgtgcagatctaagaaagccatacagcaatggatgaacttgccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagctggttaaagaattgtgcagatctaagaaagccatacagcaatggatgaacttgccc 260

                                                                       
Query: 61  ctcccaccttccgcaaaggacctccacattgccgctcataaacggtaagtgcaagaaatc 120
           |||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 261 ctcccaccttccacaaaggacctccacattgccactcataaagggtaagtgcaagaaatc 320

                                                                       
Query: 121 ttccatctgaacaatttcacaattcacaacttcaggcagggacaattccatcaactggag 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgccatctgaacaatttcacaattcacaacttcaggcagggacaattccatcaactggag 380

                
Query: 181 aggga 185
           |||||
Sbjct: 381 aggga 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)