Query= MSMg01no475_j05.b1 MSMg01no475_j05.b1 CHROMAT_FILE:
MSMg01no475_j05.b1 PHD_FILE: MSMg01no475_j05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:24 2005
(127 letters)
>mm_chr1_31728121_31728647
Length = 527
Score = 223 bits (115), Expect = 4e-63
Identities = 124/127 (97%)
Strand = Plus / Plus
Query: 1 agaaacttatttaaaatgtttatcatctctatctttcagtgcaagaaaactaacaactat 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 201 agaaacttatttaaaatgtttatcatctctatctttcagtggaagaaaactaataactat 260
Query: 61 ttagagattcaatctcacccaaccaaaaggcctattattgagaagtcaaagaacagacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ttagagattcaatctcacccaaccaaaaggcctattattgagaagtcaaagaatagacac 320
Query: 121 tactagg 127
|||||||
Sbjct: 321 tactagg 327
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 127
Length of database: 527
Length adjustment: 8
Effective length of query: 119
Effective length of database: 519
Effective search space: 61761
Effective search space used: 61761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_j05.g1 MSMg01no475_j05.g1 CHROMAT_FILE:
MSMg01no475_j05.g1 PHD_FILE: MSMg01no475_j05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:24 2005
(242 letters)
>mm_chr1_31919731_31920372
Length = 642
Score = 400 bits (207), Expect = e-116
Identities = 230/239 (96%), Gaps = 4/239 (1%)
Strand = Plus / Minus
Query: 1 aactcgatgtatattggattccagtaaactaaaattaagtaacagctgtacaggtaaaga 60
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 aactcgacatatattggattccagtaaactaaaattaagtaacagctgtacaggtaaaga 349
Query: 61 tgaagtaaggaatctaggatcaatgaattaatcaagaggtgttcataggcaaatatttaa 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 348 tgaagtaaggaatctaggatcaatgaattaatcaagaggtgtttataggcaaatatttaa 289
Query: 121 aaatacattttatatgtctagtcatggaagaataataaagaagaataaatctgtggccac 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gaatacattttatatgtctagtcatggaagaataataaagaagaataaatctgtggccac 229
Query: 181 atgaccacagatttcatacttttaaaattgtgtgtctgtgtatatgtgtgtgtgtgtgt 239
||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct: 228 atgaccacagatttcatacttttaaaattgtgtgtctgt---t-tgtgggtgtgtgtgt 174
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
