CCCAAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAATCC
GCGGAATTCTCCAAACATATCAATAAAAAGTGTGTTTTGTCATGTAGTAG
CTCATGTTTCATATTTAATACAAAAACAATATCAATTATAACATTCATTT
TCTTATGAAATTAAAATAAATGTGTGCATGTCCTCATGCCTGTAAGTTGA
AAGGGTATTACTTTGATATTTTATGAACTGCAATATTTGAAATGAATGGA
TGTAGAGACACACACACACAAAGATAATCGAAGAAATATCAAGTAATATG
GAATGTTCTGACACTTTTATATTTATTGTTTCTAGTACAAGGAGTTGATA
ATTTTTCTGTATATATAAATTATAAAATACAACTATATATAATTTATAAT
TTATGAAATGAAACTTATAATGTAGCAGTAAGGAGCATAAACCAATGAAC
TTAGCATAAATCAATAGTGAGTTGTGTAAAAAAATATGGAGCTAATGTAA
TTTCAGAAATCTCAGTTGATGTAGAAAAGCTGTAAACTAGGATATTGCTA
GACACTTTGCTTGCAGACGCTGAAAGGCAATACACTTTCCCACAAATCCA
TTTTTATAATGAAAACTGTATCGCTACAGTATAATTTCTTAAATACAAAC
CACGCGATGTACACCCATCATATAGTTTACTGATATTCTCGCCCTCTAAC
TCCTTTACTTTCACCTTTTTTTTCCGATCATCTATCCTTTATCATCCTCG

CCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGAGCCC
CTTTTTTGATGGGGTTGTCTGATTTACTGGAGTCCAGCTACTGAGTTCTT
TGTATATATTGCATATTAGTCCCCAATTGGATTTAGGATTGGGAAAAAAA
ACAAAAAAAAAAAAAAACAAAAACAAAAAACCTTTCCCAATCTGTTGGTC
TTATTGACAGTGTCTTTTGCCTTACAGAAGCTTTGCAATTTTATTGGATC
CCATTTGTGGATTCTTGAGCTTACAGCACAAGTCGTTGCTGTTCTGTTCA
GGAATTTGTCCCTGGTGCCCATATCTTCAGGGGTTTTCCCCACTTGCTTC
TCTATAAGTTTTAGCGCGCAGCTTTATCGGGAGCCCCTGGATCCACTTAT
ACGTCACCCTTTGCACTATGAGATGACCCTGCGTTCCCTCCCCCATTCTT
CTACATCGACCATTGTTTTTTATTATCCCCCCCCCTTTTTTCCCCCACGT
CTTTCTCCACGGCATTTTATCCCTTTCCCCCCGCTTCTTTTCCCCTATTA
CCCCCTGTCCACGTACCGTCCCCCTCTAACTTTGCCCTCCACCTTCCCCC
CCCCCTCTTCCTGCTCTCTTACCCTTTCTCTTCCACTTATCACCCCTTTT
CCACATCCGTTCCTTCCATTCCCTCTTTTGCCCTTTCTCTGTCCCTTATC
CCCCCTTCCCTTTCTACCN

Query= MSMg01no475_l01.b1 MSMg01no475_l01.b1 CHROMAT_FILE:
MSMg01no475_l01.b1 PHD_FILE: MSMg01no475_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:33 2005
         (467 letters)



>mm_chr1_148550345_148551211
          Length = 867

 Score =  888 bits (459), Expect = 0.0
 Identities = 465/467 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaaaagtgtgttttgtcatgtagtagctcatgtttcatatttaatacaaaaacaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaaaagtgtgttttgtcatgtagtagctcatgtttcatatttaatacaaaaacaatat 260

                                                                       
Query: 61  caattataacattcattttcttatgaaattaaaataaatgtgtgcatgtcctcatgcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caattataacattcattttcttatgaaattaaaataaatgtgtgcatgtcctcatgcctg 320

                                                                       
Query: 121 taagttgaaagggtattactttgatattttatgaactgcaatatttgaaatgaatggatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taagttgaaagggtattactttgatattttatgaactgcaatatttgaaatgaatggatg 380

                                                                       
Query: 181 tagagacacacacacacaaagataatcgaagaaatatcaagtaatatggaatgttctgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagagacacacacacacaaagataatcgaagaaatatcaagtaatatggaatgttctgac 440

                                                                       
Query: 241 acttttatatttattgtttctagtacaaggagttgataatttttctgtatatataaatta 300
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acttttatatttagtgtctctagtacaaggagttgataatttttctgtatatataaatta 500

                                                                       
Query: 301 taaaatacaactatatataatttataatttatgaaatgaaacttataatgtagcagtaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaaatacaactatatataatttataatttatgaaatgaaacttataatgtagcagtaag 560

                                                                       
Query: 361 gagcataaaccaatgaacttagcataaatcaatagtgagttgtgtaaaaaaatatggagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagcataaaccaatgaacttagcataaatcaatagtgagttgtgtaaaaaaatatggagc 620

                                                          
Query: 421 taatgtaatttcagaaatctcagttgatgtagaaaagctgtaaacta 467
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taatgtaatttcagaaatctcagttgatgtagaaaagctgtaaacta 667


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)