BAC Information

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BAC

Clone NameMSMg01-476C06
Chromosome1 (Build37)
Map Location 30,810,048 - 30,810,505
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275, LOC666056
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C06.T7 (MSMg01no476_c06.b1)MSMg01-476C06.TJ (MSMg01no476_c06.g1)
ACCAG557802AG557803
length752783
length of high quality
(start - end)
465 (49 - 513)253 (61 - 313)
definitionCHROMAT_FILE: MSMg01no476_c06.b1 PHD_FILE: MSMg01no476_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:09 2005CHROMAT_FILE: MSMg01no476_c06.g1 PHD_FILE: MSMg01no476_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GAGTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAAGGTCATTCTCCGGATACATATTTTGTTTGAAGCTAACCTG
GGCTACACAAGACCATATTTCAAAACAATATCCAACCAGCCAACTCCTCC
AAACCTCCCAACCAAAAAAAAAATCACCACCACCACCATCACCAACAAAA
AACAAGCAAATAAGCAATTATCTAGGTATTAGAGTTCATGCCTATTCTCC
CAGCATATAAGAGTACGAGGCAAAAGGATTTCTGTTAGTGTGAGGCTAAG
TTTGTGCTATATAGTAAGTTTGAGTTAGTTTGGGATAGAGAGTGAGAGGC
TAGCTCAAAGACAAACAAACAAACAAAAAGTCACCAAACAAACAAAAGAC
TGAATATGATTTGCTTCATTGTTCTCAAGCTATGCTGCTGATGGGGTAAA
CATGTTCATGCAACAAATTGAATTTATTGTCCCTGTAAATAGATGTTGAT
GATGTTTTCTGAATTCAGTAAACCCCCAGGTAGCACAAGGATGGGCATAG
TTGACCTCTACTTCCTTGCTAATTTAATTTCTGGCTTATCGATTGCTTCT
TTTTAGCTCCCTCCTTTAAAAAAATCCATAATGACAACAACTTATTATCA
TAGGGGGCGTTCACCCGAATTTTTTGAGACCTTACCTAATGACCCCACAT
AATCTACCGGAATAAATATCCCCACCTCCACCCCTTTCCTCCATTCGCGC
TG
CCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCTGAAATTCTTTGNTTAGCTCTGAGCCCCATTTTTTA
ATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATAT
ATTGAATATTAGTCCCCTATCTGATTTAGGATGGTAAAGATCCTTTCCCA
ATCTGTTGGTGGCCTTTTTGTCTTCTTGATGGCGTCTTTTGCCTTACAGA
ATTTTTGCAATTTTATGAGGTCCCATTTGTAGATTCTCGATCTTATTGTA
CAAGCCATTGCCGCTCTATGCTGGATTTTTTCCCCTGNATCCATATCCTC
GAGGGTTTTTTCCTTTTACTCCACTATAAGTTTCAGTGTCTCTGGCTTTA
TGTGGAGCCTCCTTACCCCACTTACATTTGACCTTATTACTATGATATAT
GCATGGATCAATTTTCATTCTTCCACTTGATTTTCCCCCCTTGCGTTCCT
ATCCTTTCGCTGAATTTGTCGCCTTTCTTCCACCGGTTTCGTTTTTTTCT
CCCCTTTGTTACCACCTTTTTGCCCCTTTTTTTTGCTGCGCCCTTTTTTT
CGTTTCCTTTCTTCTTTACTTCCCTTCGCCCTTCCCCCCCCTGCCCCCAT
TTACTTTTTCCCCTTGTTTCCTCCTTATTTTTTTTTTTCTTTTCTCTTCA
TACCCTTCGCGCCTCCTTGTTCCCCCCCCTCCTTTCTTCTTATTTTTCCT
TCTCTCCCCCTTTTTTTTCCCTTTCTTCTTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c06.b1 MSMg01no476_c06.b1 CHROMAT_FILE:
MSMg01no476_c06.b1 PHD_FILE: MSMg01no476_c06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:09 2005
         (465 letters)



>mm_chr1_30810048_30810909
          Length = 862

 Score =  816 bits (422), Expect = 0.0
 Identities = 451/462 (97%), Gaps = 4/462 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaggtcattctccggatacatattttgtttgaagctaacctgggctacacaag 63
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggaattcaaggtcattct-tggatacatattttgtttgaagctaacctgggctacacaag 400

                                                                       
Query: 64  accatatttcaaaacaatatccaaccagccaactcctccaaacctcccaaccaaaaaaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 399 accatatttcaaaacaatatccaaccagccaactcctccaaacctcccaacc---aaaaa 343

                                                                       
Query: 124 aatcaccaccaccaccatcaccaacaaaaaacaagcaaataagcaattatctaggtatta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aatcaccaccaccaccatcaccaacaaaaaacaagcaaataagcaattatctaggtatta 283

                                                                       
Query: 184 gagttcatgcctattctcccagcatataagagtacgaggcaaaaggatttctgttagtgt 243
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gagttcatgcctattcttctagcatataagagtacgaggcaaaaggatttctgttagtgt 223

                                                                       
Query: 244 gaggctaagtttgtgctatatagtaagtttgagttagtttgggatagagagtgagaggct 303
           ||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 222 gaggccaagtttgtgctatatagtaagtttgagttagcctgggatagagagtgagaggct 163

                                                                       
Query: 304 agctcaaagacaaacaaacaaacaaaaagtcaccaaacaaacaaaagactgaatatgatt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 agctcaaagacaaacaaacaaacaaaaagtcaccaaacaaacaaaagactgaatatgatt 103

                                                                       
Query: 364 tgcttcattgttctcaagctatgctgctgatggggtaaacatgttcatgcaacaaattga 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tgcttcattgttctcaagctatgctgctgatggggtaaacatgttcatgcaacaaattga 43

                                                     
Query: 424 atttattgtccctgtaaatagatgttgatgatgttttctgaa 465
           |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 42  atttattgtccctgtaaatagatgttgatggtgttttctgaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 862
Length adjustment: 10
Effective length of query: 455
Effective length of database: 852
Effective search space:   387660
Effective search space used:   387660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)