BAC Information

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BAC

Clone NameMSMg01-476C07
Chromosome1 (Build37)
Map Location 170,690,741 - 170,690,918
singlet/doubletsinglet
Overlap genenone
Upstream geneLmx1a, LOC100039879, Pbx1
Downstream geneEG383613, Nuf2, Rgs5, Rgs4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476C07.T7 (MSMg01no476_c07.b1)MSMg01-476C07.TJ (MSMg01no476_c07.g1)
ACCAG557804AG557805
length761752
length of high quality
(start - end)
73 (68 - 140)178 (79 - 256)
definitionCHROMAT_FILE: MSMg01no476_c07.b1 PHD_FILE: MSMg01no476_c07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:09 2005CHROMAT_FILE: MSMg01no476_c07.g1 PHD_FILE: MSMg01no476_c07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCAGAAATCCGCGGAA
TTCCTAATATTGCAAATAACATCTGGGACATTGCTACCAGTTATGGAGAA
ATGCAGTGGATTATCAGAGATCATGGTAGACAATAACTCACCATAATGTG
AATAACGTAGATAAAATGGACAATCTAAGAGACACAAAACCTACCGATAG
AGAATCACAAGAGAAATAAATTTGAACAGATGTATGACTAAGGAGATTAA
AGCTATAAGAAAACATCTCCAAATCACAAATAACTCACACAAAATGTACT
CACCGATAAGTGGATATTATTTCTTTATACTCAGACTACCCAAGATACAA
GATACAATTTGCACCATCCATGATACTCTTGAAGATTGACCTACCCTGCG
CGGATACCTGGCCCCTTCTTAGAATTGGTAACAATATACCTATACAAGGA
GCTACAGATACTACGTTTCGGATCTGAGATGATAAGATGGACCATCTATA
GATTACCATATCCGGGGATCCATCCCATATTCATCTTCCTTCCTCTGATT
TTATTGCCTACCTCACTTTGATTCTACTGACCTGGACCCTTATCCATTTG
TCTCTTGTGATACTACTTTGCCCCTCTATTTCACTCCTTACTCGTACCTT
CGTTTCCCCCCACTGTCCTGCATTTTGTTCCCCTCCCCCTTACCTTCTTT
TTTTATTTACCCCTTGCGACCTTATTGTATCCTTCCCCTCCCTTTACTCT
CTACCCATTCT
CGCAATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGCAAAAAATTCAAGAGAAAGAGAANTTAGACACTA
ATTTTTTTTTCAAAACGCCTGGCTGCTTATAATATCGAGACCCAGTAAGG
ACCATCAACCTAACCATGATCCTTCATGTAGACACAATTCACCAGAGGTT
TCAACTGCAGATTTCAATCCAGTCATCTTCGTGGGCCCTAAGTGTGTATA
TTTGTATTGTTTCTAGATGGGACTGAAGGTAATTACAAGCAACTGGGTCA
TGTTTTATGTATCAAGTCTCTCTTCCTTTATTTCAAACCCAATAGGGCAT
CTTCTGTGAACACTTGCCTTATGTTTCCAGGCAGAATCAAGCCCCCCGCT
GCTTCTGTGATCTCACACTCTGGCTATGGTCTTATCCAGTCCTTTAATTA
TTCATTGGCTTGCCTGCCTTTCTCCAACACAGAAACACATGCCATACATT
GCAAGCACTCTACGGACAGAGGCTACAGAATCTTCATTCATTCTAGAAAA
GGAAACAGAGAGGTGATTTATGAATTTGACTGTTCTTACTCCCTTCTGCC
TATTCCTCTCCCAGGTATATATCCGGTAACTGCAAAATTCCTTACGGTTG
CTCCACCGAATTTTTTCTGCTCCTATCCGCCCACCCACCCAATTTGTTAC
TTGTTATGTCCTCTTTCCTTCTTAACACCTTGTTCTACCTATTCCCACAT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_c07.g1 MSMg01no476_c07.g1 CHROMAT_FILE:
MSMg01no476_c07.g1 PHD_FILE: MSMg01no476_c07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:09 2005
         (178 letters)



>mm_chr1_170690541_170691118
          Length = 578

 Score =  339 bits (175), Expect = 8e-98
 Identities = 177/178 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaaagagaanttagacactaatttttttttcaaaacgcctggctgcttataatatcga 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gagaaagagaatttagacactaatttttttttcaaaacgcctggctgcttataatatcga 319

                                                                       
Query: 61  gacccagtaaggaccatcaacctaaccatgatccttcatgtagacacaattcaccagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gacccagtaaggaccatcaacctaaccatgatccttcatgtagacacaattcaccagagg 259

                                                                     
Query: 121 tttcaactgcagatttcaatccagtcatcttcgtgggccctaagtgtgtatatttgta 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tttcaactgcagatttcaatccagtcatcttcgtgggccctaagtgtgtatatttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)