BAC Information

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BAC

Clone NameMSMg01-476F11
Chromosome1 (Build37)
Map Location 98,115,696 - 98,116,037
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383603, Tmem157, LOC100041686, Rnu7-ps2, St8sia4
Downstream geneGm1833, Slco4c1, EG329217, Slco6b1, LOC670708, LOC623430, Slco6c1, EG634331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-476F11.T7 (MSMg01no476_f11.b1)MSMg01-476F11.TJ (MSMg01no476_f11.g1)
ACCAG557956AG557957
length755757
length of high quality
(start - end)
345 (325 - 669)241 (76 - 316)
definitionCHROMAT_FILE: MSMg01no476_f11.b1 PHD_FILE: MSMg01no476_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:25 2005CHROMAT_FILE: MSMg01no476_f11.g1 PHD_FILE: MSMg01no476_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:55:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGGA
ATTCACAAATTTCAATCCAAACACCCATGGACAACCAACTTTTATTAATA
AGCCAGAAAAATGCAATGGAATAAAGAAGACATCTTCAATCAATGATGTT
GGTCTAAGTGGATGTCAGCATATTAAAGAATACAAAGAAATATGTATCTA
CCAGACTGCACAAAACTCAAATCCAAGTGGATCAAGATTTCAACATAAAA
CTAGATACAGTGAATATGACAGAAGATAATGTGGAAATAGCCTTCACTGC
TCGGTACAGTAATTTTCTTTATTTAACAATAAAAGTTCAAGCACTGAGAT
GGATAAATAATAAATGGGACCTCATGAAACTGACAAACTTCTGTAAGGCA
AGGGAGACTATCAATAGGACAAAAATATATTTAGTCATATGTTGTGCAAC
AAGGAATAAAGTCATATAATAAAATAATAATAAAACTGACTCAATATTAT
TTTTTTAATGTTTGGTAAATTGACATTAAAAGAACTATTTTTGTCAATGT
CAGATCAAAATGAAATTCCATTTCCCCAAATTCTGGCAGTTAGACTTTTA
AGGCTCACCAGAATCAATCTTTTCTTCCTTTTCATAGTTAAACATAATGT
TAAAATCTGACTGATTTCTATATTGTTTATTGCTGTACTTTGCTTTCTCT
AAACATGTCGTCAACTAATAATCAACTTGTCTTTTTGTTTGTTGGTTGGC
TGTTT
GGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCTCNCTGNATTATTGGACATAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCCCAAAGGAACTCACACAATACGTACTCACTGATA
AGTGTATATTATTCTTAAACCCACGACACCCAAGATATAACACACAATTT
CCTAAACACTTGAAACCTCTGGAAATTTGACCACCGCCGCGTGTATTTTT
TGTCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no476_f11.b1 MSMg01no476_f11.b1 CHROMAT_FILE:
MSMg01no476_f11.b1 PHD_FILE: MSMg01no476_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:25 2005
         (345 letters)



>mm_chr1_98115335_98116079
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 341/345 (98%), Gaps = 3/345 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaataaaagttcaagcactgagatggataaataataaatgggacctcatgaaactgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 aacaataaaagttcaagcactgagatggataaataataaatgggacctcatgaaactgac 644

                                                                       
Query: 61  aaacttctgtaaggcaagggagactatcaataggacaaaaatatatttagtcatatgttg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 643 aaacttctgtaaggcaagggagactatcaataggacaaaaatatatttagtcatattttg 584

                                                                       
Query: 121 tgcaacaaggaataaagtcatataataaaataataataaaactgactcaatattattttt 180
           ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||
Sbjct: 583 tgcaacaaggaataaagtcatataataa---aataataaaactgactcaatattattttt 527

                                                                       
Query: 181 ttaatgtttggtaaattgacattaaaagaactatttttgtcaatgtcagatcaaaatgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ttaatgtttggtaaattgacattaaaagaactatttttgtcaatgtcagatcaaaatgaa 467

                                                                       
Query: 241 attccatttccccaaattctggcagttagacttttaaggctcaccagaatcaatcttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 attccatttccccaaattctggcagttagacttttaaggctcaccagaatcaatcttttc 407

                                                        
Query: 301 ttccttttcatagttaaacataatgttaaaatctgactgatttct 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttccttttcatagttaaacataatgttaaaatctgactgatttct 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)