Query= MSMg01no476_i06.b1 MSMg01no476_i06.b1 CHROMAT_FILE:
MSMg01no476_i06.b1 PHD_FILE: MSMg01no476_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:39 2005
(589 letters)
>mm_chr1_75822201_75823189
Length = 989
Score = 1079 bits (558), Expect = 0.0
Identities = 582/590 (98%), Gaps = 2/590 (0%)
Strand = Plus / Plus
Query: 1 cctcacttttggaagttcctttctgggcactctgactatgacaccattaccccagtggcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcacttttggaagttcctttctgggcactctgactatgacaccattaccccagtggcc 260
Query: 61 taccaagggctcattaattcagacacttgagacacttctctgacattgaatatgctaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taccaagggctcattaattcagacacttgagacacttctctgacattgaatatgctaatc 320
Query: 121 acaggtaccctacagcctagcctcggttaggttacatttcttccctcttgcttttcagcc 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 acaggtaccctacagcctagcctaggttaggttacatttcttccctcttgcttttcagcc 380
Query: 181 gaacccttggggaaatggctttgtcatgttgctcatttctgtttttcattgcttttcatt 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcccttggggaaatggctttgtcatgttgctcatttctgtttttcattgcttttcatt 440
Query: 241 atttctgtgttatataccaaggcagacgggaaaacacacgttactatttttaatacaact 300
||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctgtggtagacaccaaggcagacgggaaaacacacgttactatttttaatacaact 500
Query: 301 tagcaaaattcagaagggaagaagatgtaagcgtaagttccactgagatccataccatct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcaaaattcagaagggaagaagatgtaagcgtaagttccactgagatccataccatct 560
Query: 361 tcattttcccctgcggtatttattttaaaaatcaaagtccttgggggaa-tcattttttt 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tcattttcccctgcggtatttattttaaaaatcaaagtccttgggggaaatcattttttt 620
Query: 420 ttctagaaaatttctaaaaacaaaacacaggaaaacaaagcctgcccatgattctcaggc 479
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 t-ctagaaaatttctaaaaacaaaacacaggaaaacaaagcctgcccatgattctcaggc 679
Query: 480 acatgacaggaaaacagaacgacagcagctacctgctgtggcagattcctataccttgtt 539
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 acatgacaggaaaacggaacgacagcagctacctgctgtggcagattcctataccttgtt 739
Query: 540 caatgccagaattgcttggctgcaaacacgactgtacagggcagatggtc 589
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caatgccagaattgcttggctgcaaacacgactgtacagggcagatggtc 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_i06.g1 MSMg01no476_i06.g1 CHROMAT_FILE:
MSMg01no476_i06.g1 PHD_FILE: MSMg01no476_i06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:39 2005
(583 letters)
>mm_chr1_75981905_75982887
Length = 983
Score = 1112 bits (575), Expect = 0.0
Identities = 581/583 (99%)
Strand = Plus / Minus
Query: 1 atcagaaaacaacagttttagaatgtggaaacaaaaacattttataaccctatctcacgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 atcagaaaacaacagttttagaatgtggaaacaaaaacattttataaccctatctcacgc 724
Query: 61 cgctggcggaaataaataccagatgcgctaaaggatagaatgtagaagaattaagccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cgctggcggaaataaataccagatgcgctaaaggatagaatgtagaagaattaagccaca 664
Query: 121 ggaagaaactgaagcaaatgtttgtcaaatctctagagtgaaaaggaatttcagagctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggaagaaactgaagcaaatgtttgtcaaatctctagagtgaaaaggaatttcagagctta 604
Query: 181 aaagcttagaacaagccacaaagtaaagctacacagacttaaccgcatcaaaactgtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 aaagcttagaacaagccacaaagtaaagctacacagacttaaccgcatcaaaactgtaaa 544
Query: 241 cctgcaaatattgagataaaggaaccaatgtaaagaggtaaatggagaagcgcatttgca 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cctgcaaataaagagataaaggaaccaatgtaaagaggtaaatggagaagcgcatttgca 484
Query: 301 tagctgaggacatgtaactggttggcaaaacataggaaacagagaagctatgtagtaatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tagctgaggacatgtaactggttggcaaaacataggaaacagagaagctatgtagtaatc 424
Query: 361 aaaaaatccaagttaatccatgatagcgtagctcatctgtccatttaagaatgagtctcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaaaaatccaagttaatccatgatagcgtagctcatctgtccatttaagaatgagtctcc 364
Query: 421 tctctgacagggctccctgctgaacagcaaacactaaacacacaagtccaaatgctgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tctctgacagggctccctgctgaacagcaaacactaaacacacaagtccaaatgctgatg 304
Query: 481 tttgtagtctgggatggcagaaaagtaacaaagaataagatgagtctgactgactgtgtg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tttgtagtctgggatggcagaaaagtaacaaagaataagatgagtctgactgactgtgtg 244
Query: 541 agatttccaaaggtctgggactcagagcatggaagctgtagcc 583
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 agatttccaaaggtctgggactcagagcatggaagctgtagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 583
Length of database: 983
Length adjustment: 10
Effective length of query: 573
Effective length of database: 973
Effective search space: 557529
Effective search space used: 557529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
