Query= MSMg01no476_i07.b1 MSMg01no476_i07.b1 CHROMAT_FILE:
MSMg01no476_i07.b1 PHD_FILE: MSMg01no476_i07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:39 2005
(478 letters)
>mm_chr1_72330049_72330923
Length = 875
Score = 826 bits (427), Expect = 0.0
Identities = 463/478 (96%), Gaps = 7/478 (1%)
Strand = Plus / Plus
Query: 3 ataaagagaaaccctgtctagaanaaaacaaaaaa--caaaacaaaataacaaaaaaaga 60
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
Sbjct: 203 ataaaaagaaaccctgtctagaaaaaaacaaaaaaaacaaaacaaaataacaaaaaaa-a 261
Query: 61 gtaaacccaaagaagatgtacattctcacatatttaaatatttaatgtaactattttctt 120
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 262 gtaaacccaaagaagatgcacattctcacatatttaaatattaaatgtaactattttctt 321
Query: 121 cttgatggcttccttccttgtgcgtgtgtttaagtgatcattctaagtttaataactttt 180
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 322 cttgatggcttcctt----gtgcgtgtgtttacgtgatcattctaagtttaataactttt 377
Query: 181 cctttttcttgcttttagcacaggggacgtgagaagaaaatctgatcagggcctctcaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 cctttttcttgcttttagcacaggggacgtgagaagaaaatctgatcagggcctctcaac 437
Query: 241 atttctcggctatttttaataaaacctctgttatttcgttttccctcattgctcagctct 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atttctcggctattcggaataaaacctctgttatttcgttttccctcattgctcagctct 497
Query: 301 gcagaccggagctttgcaacctcttcccggtccgccagcactcccctctgtctctgaacc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcagaccggagctttgcaacctcttcccggtccgccagcactcccctctgtctctgaacc 557
Query: 361 cagtttacccgagctggacctctgcggacactagcccagccccagaggcctgctcacgta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cagtttacccgagctggacctctgcggacactagcccagccccagaggcctgctcacgta 617
Query: 421 cccaggtgcaggagctcccgggagacggcttttccaatgcctgtgcccccgccggtga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cccaggtgcaggagctcccgggagacggcttttccaatgcctgtgcccccgccggtga 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 875
Length adjustment: 10
Effective length of query: 468
Effective length of database: 865
Effective search space: 404820
Effective search space used: 404820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no476_i07.g1 MSMg01no476_i07.g1 CHROMAT_FILE:
MSMg01no476_i07.g1 PHD_FILE: MSMg01no476_i07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:55:39 2005
(245 letters)
>mm_chr1_72545847_72546491
Length = 645
Score = 441 bits (228), Expect = e-128
Identities = 240/244 (98%)
Strand = Plus / Minus
Query: 1 tttttttctttatagatatccttttcacatttgattgatccagagttgatatttgtggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tttttttctttatagatatccttttcacatttgattgatccagagttgatatttgtggat 254
Query: 61 agggtgggaattcaccttcatcttttccacacatgagtatgtatttcattacattttcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 agggtgggaattcaccttcatcttttccacacatgagtatgtatttcattacattttcct 194
Query: 121 caggagatgtgattaaagcttcatttactccaggtagggcattgagaacaaatcatatat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 193 caggagatgtgattaaagcttcatttactccaggtagggcattgagaacaaatcaaagaa 134
Query: 181 atgagtccagccaagactagtttggtgaaccagtaagtttaattgaggtgacttacagga 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 133 atgagtccagccaagactagtttggtgaaccagtaagtttaattgaggttacttacagga 74
Query: 241 gtgt 244
||||
Sbjct: 73 gtgt 70
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
