Query= MSMg01no477_d15.b1 MSMg01no477_d15.b1 CHROMAT_FILE:
MSMg01no477_d15.b1 PHD_FILE: MSMg01no477_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:36 2005
(189 letters)
>mm_chr1_12780581_12781169
Length = 589
Score = 342 bits (177), Expect = 6e-99
Identities = 186/189 (98%)
Strand = Plus / Plus
Query: 1 tcattacggattgtgctagaaccttacatgtggttccagagagcactggtctacactgct 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattacggaaagtgctagaaccttacatgtggttccagagagcactggtctacactgct 260
Query: 61 gtgaataaatcgtgtcatcccacccacaaagacaggatagacagcaatcaacaccccagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaataaatcgtgtcatcccacccacaaagacaggatagacagcaatcaacaccccagg 320
Query: 121 aggaaacgacctgtagggagcatgctcattgctcaattcagcaccccctgactgggcttc 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 aggaaacgacctgtagggagcatgctcattgcccaattcagcaccccctgactgggcttc 380
Query: 181 ctccagaat 189
|||||||||
Sbjct: 381 ctccagaat 389
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space: 105161
Effective search space used: 105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no477_d15.g1 MSMg01no477_d15.g1 CHROMAT_FILE:
MSMg01no477_d15.g1 PHD_FILE: MSMg01no477_d15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:36 2005
(551 letters)
>mm_chr1_12991943_12992893
Length = 951
Score = 992 bits (513), Expect = 0.0
Identities = 542/553 (98%), Gaps = 6/553 (1%)
Strand = Plus / Minus
Query: 1 caggacagccagggctaaacagagaaaccctgtcttgaacccccccccccaaaaaaatgt 60
||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||||
Sbjct: 603 caggacagccagggctaaacagagaaaccctgtcttgaa--ccccacccctaaaaaatgt 546
Query: 61 ggggcatattttaaataaagctatggaaacagaacgaaccatactacctaaaatagaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ggggcatattttaaataaagctatggaaacagaacgaaccatactacctaaaatagaaca 486
Query: 121 gctatatttagaagcttttagtctagcttgaccttgacatttacattaacacagctgtct 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 485 gctatatttagaagcttttagtctagcttgaccttgacatttacataaacacagctgtct 426
Query: 181 tttaggctgatcataagccctcatgttctcccttttgtctctaaaccactccacgggcgt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tttaggctgatcataagccctcatgttctcccttttgtctctaaaccactccacgggcgt 366
Query: 241 aactgttctgccacggcagaaggaaaactgaatataactagttcaccttctacgctagga 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aactgctctgccacggcagaaggaaaactgaatataactagttcaccttctacgctagga 306
Query: 301 tcttaaatcacttgtctttggccaacagcgcattgagggtgacttactagcaattattgt 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 305 tcttaaatcacttgtctttggccaacaacgcattgagggtgacttactagcaattattgt 246
Query: 361 atacattagttgattttctcattgctgc-aaaaaaaaaaattaccagacaaaagcaactt 419
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 245 atacattagttgattttctcattgctgcaaaaaaaaaaaattaccagacaaaagcaactt 186
Query: 420 gaggagggaagggtttgttttagctgtgccccatgcctggcttc-tttttttttttttca 478
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 185 gaggagggaagggtttgttttagctgtgccccatgcctggcttcttttttttttttttca 126
Query: 479 tttttaacttattttttatgttatgtgtgtgtgtgtgttttgcctgaatgtacctctatg 538
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 125 tttttaacttattttttatgtta--tgtgtgtgtgtgttttgcctgaatgtacctctatg 68
Query: 539 tacagtttgtgtg 551
|||||||||||||
Sbjct: 67 tacagtttgtgtg 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 551
Length of database: 951
Length adjustment: 10
Effective length of query: 541
Effective length of database: 941
Effective search space: 509081
Effective search space used: 509081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
