BAC Information

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BAC

Clone NameMSMg01-477G04
Chromosome1 (Build37)
Map Location 90,147,805 - 90,148,028
singlet/doubletsinglet
Overlap geneLOC100040766
Upstream geneEfhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561, Ugt1a@, Ugt1a10, Ugt1a9, Ugt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1
Downstream gene6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477G04.T7 (MSMg01no477_g04.b1)MSMg01-477G04.TJ (MSMg01no477_g04.g1)
ACCAG558749AG558750
length750736
length of high quality
(start - end)
---233 (82 - 314)
definitionCHROMAT_FILE: MSMg01no477_g04.b1 PHD_FILE: MSMg01no477_g04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:48 2005CHROMAT_FILE: MSMg01no477_g04.g1 PHD_FILE: MSMg01no477_g04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGACGAAACAACAGCACAACCAAACAAAAAAAAAGCCACAGAAAGAAAAA
ACCACAAAACGAAAAACACACAGAAAGAAAGAAGCGACGAAAACAAAAGG
GAGGGAAAAAAAAAAAGGGGCGGGCCAGGCCCAAAAACCCTAAACACCAC
CACAGAAGTTGGTCCCCCCAGGGAAAAACCGGGGGGGAAAAAAACCCAGG
GGGGCCTTTTACAGCCGGGGGGGAAGAAAAACCCCAAACACACCCCCGGG
GCGGGCCAACCCGCGGGGCGAAAACACCCCCCCAAAAAAAGGGGCGCCCC
CCCCCCCCCCCCCCAAGAGGAGGGGAGAAACACCCCCCCCAAAAAACCCC
GGGGGGGGAAAGCCCCCCAACGCCCCCACAAAAGGGGGGGGCGCACACAA
AAAAAAAAACCTCCTTAACACACACACAAAATAAACACCCCCCAAAAAAA
ACAAACCGGAGGGGGAGGAGGAAAAGAAAAACCCCCCCCCCCACACAAAC
CTAAAGAAACGAACACCCGAGATGCTACCGGCGGGAAACGAACCCCCCCC
AAAAAAAAGAAACACAAAGGAAAAAAAGCGCCCGACAAAAAAACAGCGAC
ACAAAAAAAAAAAGAAGCCCATCAACAACGCGGGGCCGCCACCCCAGCAG
GGCCACCACTCTGAAGAGCTCACACACCCACCCTTCTAACCGCCCGCCCG
CCCTCCCACAAAACAAAAAAGACCGGGGGGCGGCGGGCAACACACAAAAN

AAAAACCGATGACAGTGGGAGGCCTGGNGGNCGCCTTTTCATACCGGGGA
GGNGAACTATAGAATACACACACAGGGCTGNCTTGCTCTGATCCTAGGTG
GTTTGCCCAGAGTTTAACTTCGCCGAGGTTGTCTCTCTCATCCAGAAGCT
CTGTGAGAACATTGGGGCCATGGACCTGCAGCATGACAGGGCTGCTGTTA
CCTGGATAGGCATCTTCCTCCAGATGCGGGTCAAGGAGCTGGAGGACAAG
GTATTCAAGCTCAGCAGGGGATGCTTGGATTGGTACTGGGACTGACCTGT
GTAGCACACACATGGTTTAATACTTCTTCCACCCAAACTAGGAGTGCTAA
ATGGGATAATACAGAGTTCTAGAATGAGAAATCTGTTGAGATGTAACTAG
TCAGTGAGTAGATGAGGGACTACTGGTGCCAGGCTCTTTTCAGCGAAGCA
CAGTGAAGACACACTGAACATGTAGGAGGAAAAGACCCATAGGGCTTCCA
GAGAGGGCTTTTGGGAGTGGGGTGTCTAACCAACACACCATGTTTCCCAA
GATAGGAGTATCCTTCAGGGGCCCAGAAATACCTTTATTTCTGTCTCTGT
CATAAAGTACACTGACCAAACACAATTTAGCAAAGTCTATGGTCAAACTG
GTTTTTTTTCATCTCTGCAGGACATTCAGTAGCCAGCGAAATTATATCTC
CAGTTAATAGCCCTGTGGGGGTGCACACCTTTAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_g04.g1 MSMg01no477_g04.g1 CHROMAT_FILE:
MSMg01no477_g04.g1 PHD_FILE: MSMg01no477_g04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:49 2005
         (233 letters)



>mm_chr1_90147604_90148231
          Length = 628

 Score =  381 bits (197), Expect = e-110
 Identities = 219/229 (95%), Gaps = 5/229 (2%)
 Strand = Plus / Plus

                                                                       
Query: 2   ttgctctgatcctaggtggtttgcccagagtttaacttcgccgaggttgtctctctcatc 61
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 202 ttgctctgatcctaggtggtttgcccagagtttaactgcgacgaggttgtctctctcatc 261

                                                                       
Query: 62  cagaagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgttacc 121
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 262 cagaagctctgtgagaacattggggccatggacctgcagcatgacagggctgctgtcacc 321

                                                                       
Query: 122 tggataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtattcaagctc 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 322 tggataggcatcttcctccagatgcgggtcaaggagctggaggacaaggtaaccaagctc 381

                                                            
Query: 182 agcaggggatgcttggattggtactgggactgacctgtgtagcacacac 230
           ||||||||||||||||     ||||||||||||||||||||||||||||
Sbjct: 382 agcaggggatgcttgg-----tactgggactgacctgtgtagcacacac 425


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 628
Length adjustment: 9
Effective length of query: 224
Effective length of database: 619
Effective search space:   138656
Effective search space used:   138656
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)