BAC Information

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BAC

Clone NameMSMg01-477G07
Chromosome1 (Build37)
Map Location 46,799,222 - 46,799,468
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
Downstream geneSlc39a10, EG227061, LOC666869
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477G07.T7 (MSMg01no477_g07.b1)MSMg01-477G07.TJ (MSMg01no477_g07.g1)
ACCAG558755AG558756
length760754
length of high quality
(start - end)
289 (73 - 361)240 (81 - 320)
definitionCHROMAT_FILE: MSMg01no477_g07.b1 PHD_FILE: MSMg01no477_g07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:49 2005CHROMAT_FILE: MSMg01no477_g07.g1 PHD_FILE: MSMg01no477_g07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:49 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CTTTCTATAATTTGCGGTCGCTAATAGACTCACTTTGCGAAGAGGATCCG
CGGAATTCTTTGTTCTCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCCTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGC
CTTTTTGTCTTATTGACGGTGTCTTTTGCTTTGCAGAAGCTTTGCAATTT
TATGAGGTCCCATTTATCGATTCTTGATCTTACAGCACAAGCCATTGCTG
ATCTATTCAGGAATTTTTCCTCTGTACCCATGTCTTCGAGGCTTTTCCCT
ACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTGTATGTGGAGTTCCTT
AATCTACTTAGATTTGACCATAGTACAAGTAGATAGAAATGGATCAATTC
ACATTCTTCTACATGATAACCGCCAGTTGTGCCAGCACCACTTGTTGAAA
ATTCTGGACTCGAGTCTCGGGCTACCTTGCCAGTGGAGCCTTCTGTCTCC
CTCATGGGCCCATACTGTATCCTCCACGGTATCCCAATACCTCTGGCGTA
TGCAACATATTGCTTGTCCCCTATTCTTTTGCTCGGTATCCTGTATACTG
CTGTCTCTTATGTGATACTTATTTTCTACTGTTCCTGTACTTGCCGCCAT
ATACCCTTTTCTGGCATCCACTTTTAAACCCCCTGCGTCTTTTTTGCTCT
TATTTATTAT
NCCCACCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGCTCAAAAGAGTTCATTTGACTTGTTAGTGAGA
GAAATTTTCAGTTTGGCCTTTGTTTCTAATTTTTAGTGTTTGTTTCTAGT
CCTTGAAGTTTTCAAGTTAGTGAGGATTACCGAAGAAAAACAAAATTGTA
GGTGATCTCTTAAATAAAACATCCATGTTTCCAGTTAATTAGGCACACAC
ATTGTTTTCTGCAGTGGATTTGAAGTTCTGGGACAGGATCTTTATTTATT
ATTGACCACCGTTGAGTGTGCATGNTTGAATGCATGTGTGTGTCCTGCAC
ACTAGCCTGTAAGGGCATGTCACAGCACACACATCGGGATTAAGGGAAAA
CCTCAGGAGCTGGTNTCTTGGTTCAAGGGCCAGGGACTCGCCTGGTGTTT
CAAGGGCTGTTGTACTCCCAAGGGTAACTTGAATTTTGGGGTTTAACAAA
AAAGGGTTTTTTCCCTGGGTTTAAACCCCCCCCCGGTTTTTTTATATTAC
ACCCCTNCCCCCCCGCNCCCCTCTTTTTCCTTTTTTTATATTCTCTTCTC
CCTTATTTCCCTTTCCACTTATCTTTTCCCCCCCCTACATCCGGTTATTA
TTTTTCTTTTTCCTCTCCCCAACTATTTTCGTCTCTTTTGTACACATCCC
ACCACTCTACTTTTTTTTAATTTACTCCTTCCTTTTTTTCTCTTACCCTC
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_g07.g1 MSMg01no477_g07.g1 CHROMAT_FILE:
MSMg01no477_g07.g1 PHD_FILE: MSMg01no477_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:49 2005
         (240 letters)



>mm_chr1_46799022_46799668
          Length = 647

 Score =  368 bits (190), Expect = e-106
 Identities = 231/248 (93%), Gaps = 9/248 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttgacttgttagtgagagaaattttcagtttggcctttgtttctaatttttagtgtt 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttgacttgttagtgagagaagttttcagtttggcctttgtttctaatttttagtgtt 260

                                                                       
Query: 61  tgtttctagtccttgaagttttcaagttagtgaggattaccgaagaaaaacaaaattgta 120
           |||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 261 tgtttctaatccttgaagttttcaagttagtgaggattactgaagaaaaacgaaattgta 320

                                                                       
Query: 121 ggtgatctctt-----aaataaaacatccat--gtttccagttaattaggcacacacat- 172
           | |||||||||     ||| |||| ||||||  |||||||||||||||||||||||||| 
Sbjct: 321 gatgatctctttttaaaaaaaaaaaatccatatgtttccagttaattaggcacacacatc 380

                                                                       
Query: 173 tgttttctgcagtggatttgaagttctgggacaggatctttatttattattgaccaccgt 232
           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 tgttttctgcactggatttgaagttctgggacaggatctttatttatt-ttgaccaccgt 439

                   
Query: 233 tgagtgtg 240
           ||||||||
Sbjct: 440 tgagtgtg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 647
Length adjustment: 9
Effective length of query: 231
Effective length of database: 638
Effective search space:   147378
Effective search space used:   147378
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)