Query= MSMg01no477_g13.b1 MSMg01no477_g13.b1 CHROMAT_FILE:
MSMg01no477_g13.b1 PHD_FILE: MSMg01no477_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:50 2005
(556 letters)
>mm_chr1_33109068_33110023
Length = 956
Score = 654 bits (338), Expect = 0.0
Identities = 400/438 (91%), Gaps = 32/438 (7%)
Strand = Plus / Minus
Query: 1 gcaaattctgtttatatgtacccatgttaaactctcccccatctatcaaaggctctggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcaaattctgtttatatgtacccatgttaaactctcccccatctatcaaaggctctggga 377
Query: 61 atccaacttaaataagacttgttagagaggtgctttgccctgatagatagatcagcctag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 atccaacttaaataagacttgttagagaggtgctttgccctgatagatagatcagcctag 317
Query: 121 aacctttgtgtggtacaagtctgactatactggggttgtttgagaagtggtgaacaccat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aacctttgtgtggtacaagtctgactatactggggttgtttgagaagtggtgaacaccat 257
Query: 181 ttgccactctttgtctcattgctatctagtaatggaataatggtctcactattttttttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ttgccactctttgtctcattgctatctagtaatggaataatggtctcactattttttttc 197
Query: 241 tttttaaaaat------------attttttattaggtattttcctcatttacatttccaa 288
||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 196 tttttaaaaatattttttttttcattttttattaggtatttaactcatttacatttccaa 137
Query: 289 tgctatcccaaaagtcccc--tat--------------tcccctatccacccactcccac 332
|||||| |||||||||||| ||| |||||| |||||||||||| |
Sbjct: 136 tgctataccaaaagtcccccatatccacccacccccactcccctgcccacccactccccc 77
Query: 333 tttttggccctggcgt-tt-ccctgtactggggcatataaagtttgcaagtccaatgggc 390
|||||||||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tttttggccctg--gtattcccctgtactggggcatataaagtttgcaagtccaatgggc 19
Query: 391 ctctctttccagtgatgg 408
||||||||||||||||||
Sbjct: 18 ctctctttccagtgatgg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space: 516516
Effective search space used: 516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no477_g13.g1 MSMg01no477_g13.g1 CHROMAT_FILE:
MSMg01no477_g13.g1 PHD_FILE: MSMg01no477_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:50 2005
(403 letters)
>mm_chr1_32957676_32958478
Length = 803
Score = 714 bits (369), Expect = 0.0
Identities = 388/403 (96%), Gaps = 14/403 (3%)
Strand = Plus / Plus
Query: 1 cttgctctcaagcctgacacattgaatataattcacaagaactacatggtggaaggaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cttgctctcaagcctgacacattgaatataattcacaagaactacatggtggaaggaatg 274
Query: 61 gaccaactcctgaagatcatgctgttctctgacttccacatgcactcacatacacataca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaccaactcctgaagatcatgctgttctctgacttccacatgcactcacatacacataca 334
Query: 121 cacacacatgcgtgcacaaacacacacataaataaataaataaataaataaataaataaa 180
|||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 335 cacacacatgcgtgcacaaacacacacaca--------------taaataaataaataaa 380
Query: 181 taaataaataaataaataaataaatagactataacaaaagtttcacaacaaaaagctata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaataaataaataaataaataaatagactataacaaaagtttcacaacaaaaagctata 440
Query: 241 tatacttcactcaccagctgattatattgacttctttgacactgatattaaggaaagaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatacttcactcaccagctgattatattgacttctttgacactgatattaaggaaagaaa 500
Query: 301 ccttatggggacataaggcgagcaagctgtaacacaccagttgctcgtgcaaattgtgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccttatggggacataaggcgagcaagctgtaacacaccagttgctcgtgcaaattgtgaa 560
Query: 361 ttgctatgatctgatgcagcggacgcaattgcaggactcagaa 403
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgctatgatctgatgcagcggacgcaattgcaggactcagaa 603
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
