AATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCCAGCATTTTTTTATAGGCAAGCAGACTAAGATTTCCGATA
GCTTCTACTTCTCAACAGGTTCTATTTCCCAACCAATAGGTTATCTGGGT
TCAAGGTGACCCAAACCTCCTTACATACTTTAAAATCTATCAGCAGTTCA
ACTCTTAGATGTGTAGTCGAATTAAACTATACATAAAGTTAGTTTTCTTG
GGAAAATCATCATGAATGCCACTTCCTCAGGGATGCAGCTTACTTGGCAG
CACACCAGAATCTTCTGCAGAGAAAGTATACTTACTTGGTGTCCCAGTGT
GCTGGCATTCACAGATATCCCTAAGTCACCTTGCATTTAGTATGTTGAGA
GCAGTCACATTATGCCATTTCTCTACAATTGTATATATGCAATATTGAAT
TATATTACAAGGTCCTTGAACCTGAAAAAATTGACTCATGTTTAAAAATG
ATAGAAATTTAACTGAGTGGAAACCATACTAAACATGGATGAGGTGTAGG
CAACAAAAACAGAGAAAGAAAAAGGAAACATATGTTTATTTTTTTGTGAT
GGCCATTCTTGGTTGTCAAATTAACTTCATTTGGAATTAACCAAAGCCCA
AGCAGTTGTGTACAAATGTTTCTTGTTTGGATCATTTGAGGTAGAACCAC
CTTAAATCCAGATAATTTGTGCAAAGACAC

NNNCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCCTCAGCTGGGG
AACGGTGGTAATGAAGTGTTCCCACAACACAGACTGTTGAGAAGGATTCA
ACTGTGTGAATTCAGAACTCTTCAGCTGGGGAACAGGGTACCCGTAAGTA
TAGCTTTACAAGGTACGCCTGGCCTTGAACTTTCTAACGAAATTCAAGAC
AGTCTATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTATGTTTGGCCT
TGAACTTTTTCTAGTGTTAGGAGTCTTTTTGTTCCTTTTCACATGTTATC
AAGTGGTTAAGGCAGGGCTGAAAATTCTGGATGAAATTCAGGGCAATCTA
TCAGAAGTAAAGCGGGGAGAGAGAGTAGGAGCAAAGAGGAAATATGGCGC
AAAAAATAAGTATACAGGCCTTTCCACGGGTCTTGAACCTGAGGAAAAGT
TTAGGTCAGGTAAGAATACCTGGGGAGAGATTAGAAGGAAGGAGAAGGAA
AAAGAAAAGAAAAAAGATCAATTAGCGGAGGTCTCTAGGAGAAGGAGCCT
ATACTCATCACTAGGTGAGCTCAAGGAGCCAGTTCTTAGTAGTTTTGAAT
CAGATGAGAAGGCTATTAGGGCCTGGAAGGCGCTCTCCCAAGCAGGTGAA
GCCACTGGACAACTAACAAAGATTGTCCAGGGACCTCAGGAATCA

Query= MSMg01no477_o02.b1 MSMg01no477_o02.b1 CHROMAT_FILE:
MSMg01no477_o02.b1 PHD_FILE: MSMg01no477_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:27 2005
         (566 letters)



>mm_chr1_114157501_114158465
          Length = 965

 Score =  953 bits (493), Expect = 0.0
 Identities = 517/525 (98%), Gaps = 3/525 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctccagcatttttttataggcaagcagactaagatttccgatagcttctacttct 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 gaattctccagca-ttttttataggcaagcagactaagatttccgatagcttctacttct 669

                                                                       
Query: 65  caacaggttctatttcccaaccaataggttatctgggttcaaggtgacccaaacctcctt 124
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 caacaggttctatttctcaaccaataggttatctgggttcaaggtgacccaaacctcctt 609

                                                                       
Query: 125 acatactttaaaatctatcagcagttcaactcttagatgtgtagtcgaattaaactatac 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 608 acatactttaaaatctatcagcagtccaactcttagatgtgtagtcgaattaaactatac 549

                                                                       
Query: 185 ataaagttagttttcttgggaaaatcatcatgaatgccacttcctcagggatgcagctta 244
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 ataaagttagttttcatgggaaaatcatcatgaatgccacttcctcagggatgcagctta 489

                                                                       
Query: 245 cttggcagcacaccagaatcttctgcagagaaagtatacttacttggtgtcccagtgtgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 cttggcagcacaccagaatcttctgcagagaaagtatacttacttggtgtcccagtgtgc 429

                                                                       
Query: 305 tggcattcacagatatccctaagtcaccttgcatttagtatgttgagagcagtcacatta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 tggcattcacagatatccctaagtcaccttgcatttagtatgttgagagcagtcacatta 369

                                                                       
Query: 365 tgccatttctctacaattgtatatatgcaatattgaattatattacaaggtccttgaa-c 423
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct: 368 tgccatttctctacaattgtgtatatgcaatattgaattatattacaaggtcctt-aagc 310

                                                                       
Query: 424 ctgaaaaaattgactcatgtttaaaaatgatagaaatttaactgagtggaaaccatacta 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctgaaaaaattgactcatgtttaaaaatgatagaaatttaactgagtggaaaccatacta 250

                                                        
Query: 484 aacatggatgaggtgtaggcaacaaaaacagagaaagaaaaagga 528
           ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 249 aacatggatgaggtgtaggcaacaagaacagagaaagaaaaagga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 566
Length of database: 965
Length adjustment: 10
Effective length of query: 556
Effective length of database: 955
Effective search space:   530980
Effective search space used:   530980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)