BAC Information

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BAC

Clone NameMSMg01-478B10
Chromosome1 (Build37)
Map Location 9,605,876 - 9,606,508
singlet/doubletsinglet
Overlap gene3110035E14Rik
Upstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, Adhfe1, LOC620542
Downstream geneMybl1, Vcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478B10.T7 (MSMg01no478_b10.b1)MSMg01-478B10.TJ (MSMg01no478_b10.g1)
ACCAG559286AG559287
length731729
length of high quality
(start - end)
406 (317 - 722)644 (66 - 709)
definitionCHROMAT_FILE: MSMg01no478_b10.b1 PHD_FILE: MSMg01no478_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:43 2005CHROMAT_FILE: MSMg01no478_b10.g1 PHD_FILE: MSMg01no478_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXCTATTCAAAGAGGAGGCGCGGAATTCC
TCTGTCCCTGATTTACTAACACTATGTTTTTCCTGAATTTACTCCATATT
CTTCATGTCTGCTAAAGAATTTCAGCAAATTTCTTCCTGGGTGGAAGGAA
GAAGATACACAAGACAGTCTCCTGCAGTTGAGTAATACACGTGACAATGT
ACATTTTTCATCTACACATAAAAATGAAATGCCACTTCATTATTTAAGCA
CACTTGCCGACACTAACATACTCATGCCCCACAGGCCTTTGTCAGGTGAC
TTGAGGAATGATTTATCCACAGCTTGAAAGGTTTAACGAGGTACTGTAAC
AGTTCAATTTTTAGTCACTGGGCTAGTGACAAGATGCAACTTAGAGGAGG
GAAGGTTTGAGCTGAGCTAAAGTTCAGAGGAATGCAGCCCACCCTGTTGA
GGAAGGCCTGGCAGACATAGTAGCTTGCTCAGCAGGGAACACCAGGGAGC
AGAGAAAGAAATGGCTCTGTCTCAACTGGCTTTCTCCTTTTGTCAAGTAC
AGAGCTCCCTCCTACTGTAGGGCAGGGCCATCCACATTCTGGTGGGTTTT
CCTTCCCCAGGGAAATTGTCTCTGGAGACTCCCTCGCAGACAGACCCATA
GGTGTGCCTCATTGATGCCCCTGGATATATTCTAATCCAATCAGGCTGGT
CATAGAGATTAATCATCGCAGGCACCTTCAN
AGTGGGAGGCCTGGCGGCCGCCGGTTCAAATAAGGTAGGTGACACTATAG
AATGCCACGAGGAATTCCAGAACTAAGGCATGTCAATCGATCAGTTTTTA
CACACACACACACACACACACACACACCTCAACCGTGCTGCAAGGCAGGT
TGTGGTTTTTCTAATCTTCCATTTGACCTACTGCCATCACCCTCTGCCAG
ATCACAGAACAGAAAAACCAGTGCTGTAGAAATTGTTTGACCCATGCAAG
GTGACATTCCTTGGCAGCCACAGAGACAAGGTACAAAACCAGTCTCCTGA
TGTAATGTTTTTTGCTGTATCTCCTGGCTGTCTAGTTTTAGGGGTCACTT
TTATAGTTTTTAAAAGAGTATCTCATAATGTAGTCCAAGCTGACCTCAAA
CTCATGATCCTCCTGCCTCAGCATCCCAAGAGCTAGGACCATGAGTGCAT
AACTATGGTTGGCTGCTTTCACAACTTTGCAGGTAGTTCGTGTCCTCTCG
TACTGCAAAGTCAGTCTTTATTCTGAAGACAAGATCAGTAGGTTATGAAA
TGGAAAGTCTGTTCAACATGTGACTGTCAGCTCATGCAGGGATGTTCTAC
TCAGGTTTGGGTGGGGGGAAAAATAGATTCAGCTGGGCATTGATTCAATT
CTCTCAGAACTTCCAATCTGATAGATTCCAGGATGGGTTGGAGGAGTGTT
GCTGAGCCAAAACCAAACCTTGATGCTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_b10.g1 MSMg01no478_b10.g1 CHROMAT_FILE:
MSMg01no478_b10.g1 PHD_FILE: MSMg01no478_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:43 2005
         (644 letters)



>mm_chr1_9605667_9606710
          Length = 1044

 Score = 1046 bits (541), Expect = 0.0
 Identities = 614/651 (94%), Gaps = 25/651 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccagaactaaggcatgtcaatcgatcagt-ttttacacacacacacacacacacacaca 59
           |||||||||||||||||||||||||||||| ||||||||||||||||||||         
Sbjct: 210 tccagaactaaggcatgtcaatcgatcagtgttttacacacacacacacac--------- 260

                                                                       
Query: 60  cacctcaaccgtgctgcaaggcaggttgtggtttttctaatcttccatttgacctactgc 119
           | |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||
Sbjct: 261 c-cctcaaccgtgctgcaaggcagatcgtgctttttctaatcttccatttgacctactgc 319

                                                                       
Query: 120 catcaccctctgccagatcacagaacagaaaaaccagtgctgtagaaattgtttgaccca 179
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 320 catcaccctctgccagatcacagaacagaaaaaccaatgctgtagaaattgtttgactca 379

                                                                       
Query: 180 tgcaaggtgacattccttggcagccacagagacaaggtacaaaaccagtctcctgatgta 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 tgcaaggtgacattccttggcagccacagagacagggtacaaaaccagtctcctgatgta 439

                                                                       
Query: 240 atgttttttg------ctgtatctcctggctgtctagttttaggggtcacttttatagtt 293
           |||      |      ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atg------gtcagcactgtatctcctggctgtctagttttaggggtcacttttatagtt 493

                                                                       
Query: 294 tttaaaagagtatctcataatgtagtccaagctgacctcaaactcatgatcctcctgcct 353
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttt--aagagtatctcataatgtagtccaagctgacctcaaactcatgatcctcctgcct 551

                                                                       
Query: 354 cagcatcccaagagctaggaccatgagtgcataactatggttggctgctttcacaacttt 413
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 552 cagcatcccaagagctaggaccatgagtgcattactatggttggctgctttcacaacttt 611

                                                                       
Query: 414 gcaggtagttcgtgtcctctcgtactgcaaagtcagtctttattctgaagacaagatcag 473
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 612 gcaggtagttcgtgtcctctcatactgcaaagtcagtctttattctgaagacaagagcag 671

                                                                       
Query: 474 taggttatgaaatggaaagtctgttcaacatgtgactgtcagctcatgcagggatgttct 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 taggttatgaaatggaaagtctgttcaacatgtgactgtcagctcatgcagggatgttct 731

                                                                       
Query: 534 actcaggtttgggtggggggaaaaatagattcagctgggcattgattcaattctctcaga 593
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 732 actcaggtttgggtggggaaaaaaatagattcagctgggcattgattcaattccctcaga 791

                                                              
Query: 594 acttccaatctgatagattccaggatgggttggaggagtgttgctgagcca 644
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 acttccaatctgatagattccaggatgggttggaggagtgttgctgagcca 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)