BAC Information

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BAC

Clone NameMSMg01-478B21
Chromosome1 (Build37)
Map Location 64,013,194 - 64,191,929
singlet/doubletdoublet
Overlap geneOTTMUSG00000013918, Klf7
Upstream geneA430093A21Rik, Ndufs1, Eef1b2, Gpr1, 1700039I01Rik, 4930431J08Rik, LOC667644, LOC100042638, Adam23, Gm215, Mdh1b, Fastkd2, 4933402D24Rik, LOC671842
Downstream genePpia-ps1_583.1, LOC100043124, Creb1, 2310038H17Rik, Ccnyl1, Fzd5, 9430067K14Rik, LOC667245, LOC100043141, 4921521F21Rik, LOC667276, Cryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478B21.T7 (MSMg01no478_b21.b1)MSMg01-478B21.TJ (MSMg01no478_b21.g1)
ACCAG559308AG559309
length746750
length of high quality
(start - end)		639 (62 - 700)661 (65 - 725)
definitionCHROMAT_FILE: MSMg01no478_b21.b1 PHD_FILE: MSMg01no478_b21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:45 2005CHROMAT_FILE: MSMg01no478_b21.g1 PHD_FILE: MSMg01no478_b21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:57:45 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,191,417 - 64,191,929)(64,013,194 - 64,013,854)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATACT
CCTACACTGCTCAGGTAAAAAGCTATTTTAAGAGAGAGCAGGTAGATAAA
GGGCTTCATTAGAGCATATCATCTCAAACTTATCCTTTTAAGCAGTAAGA
AGTGATTTTAATTTGACTTAAATTTAGCACAAAGAAGAATAAATTGAAGA
GAAATGGAAGAATTTGCTGACCCAACATGCTTCCTGTGGATGGCAGCAGG
AGGAGACCTCTGCCCCAGTTTGTCCCCTGTATTTATGGTTATACATAAGG
AGGAGCAGAAGTCTTAACACTGAATGATAAACTTCCCCCAACACACACAC
ACACACACACACACACACACACACACACACACACACAACTTTTCCTTTCT
CTGTGATGCAAAGTGTTACATCTGTATAACTCCAATCAAGCATGGGGGCA
GAAACTTCTGAGGCCAAAACTAAAGAAAGGAGCCCATACGCTACCATTTA
ACACGTGAATCTTGTGGAGTTTCTGGAAAGTTCACACTGTGGCTCTAGGT
TATAAGCAGTGCATGCCATGTGCTCCTCTGCTCACACAAAATCAATGACT
TAAAAAACCATAGGGTGGCACAATGAACAGATATACGTTCAATGCAGTAA
AGATCTGCCCAGATCCCATGCTGGACTCTGTAAGATCTTGCGCATGGAGA
ACACAACTCATGAGAAGAAAGTGAAGCATAAGGCTAGTCTGACAAA

GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXACCCATCTGAATGGGTGGATAGTTCTCAGAAAAGTC
ATCTCAAGTCTAACATGACGGGGTTCGTCTCTAAGCCCAGCACTCTGGCA
GAAGCAGGTGATTCTTTGTTTCAATTCATCGAAAGCTCCCGAACAGCTAA
AACTGCATAGAGAGGCCCAGAGAGAGAGAGACAGAAAGACAGACAGAGAG
ACAGAGAGACAGAGACAGAGAGACAGAGAGACAGAGAGGGAAGGAGGGAG
AGAGGGAGAGAGAAAGAGAAAGGTAGATCAAAAGTTCTCCCATTATGAAC
TTGTTCCAATTAATTAAAGATATTCTGATTCACTAAATTTTTTTCACTTA
TGATCATTTCTGTGATTGCAAACCATAAACTGAATCTTTATTCTTCACAA
TGTATCTATTTCTCCTTTCCATATCTTGAAGGCATGGCTGATTGAAGCAT
ATCAGAAAGCTTATATTCTGGCAGGGTGGGGGATCTTCTGATAATATTAA
CCCTTTTCTCTTTGAAGCCTGTGCACATACCAAAAATCGGTAGAGGCGAA
GCTTTGCCTGAAGAATTTCTAAGTCCAGATAAAGAAGCTTGAGAAAAGTT
GAAAGGCCACCATATACCTGCTGCATGCCAAGAGGAATATCTGCAGTGTC
ATTTGAAAGCAAAATAAGTTACCGTGCCACGAAGAAACCTGACTCATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_b21.b1 MSMg01no478_b21.b1 CHROMAT_FILE:
MSMg01no478_b21.b1 PHD_FILE: MSMg01no478_b21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:45 2005
         (639 letters)



>mm_chr1_64190891_64191929
          Length = 1039

 Score =  891 bits (461), Expect = 0.0
 Identities = 500/513 (97%)
 Strand = Plus / Minus

                                                                        
Query: 127  aataaattgaagagaaatggaagaatttgctgacccaacatgcttcctgtggatggcagc 186
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 1039 aataaattgaagagaaatggaagactttgctgacccaacatgcttcctgtggatggcagc 980

                                                                        
Query: 187  aggaggagacctctgccccagtttgtcccctgtatttatggttatacataaggaggagca 246
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 979  aggaggagacctctgccccagtttgtcccctgtatttatggttatacataaggaggagca 920

                                                                        
Query: 247  gaagtcttaacactgaatgataaacttcccccaacacacacacacacacacacacacaca 306
            ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919  gaagtcaaaacactgaatgataaacttcccccaacacacacacacacacacacacacaca 860

                                                                        
Query: 307  cacacacacacacacacacaacttttcctttctctgtgatgcaaagtgttacatctgtat 366
            |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct: 859  cacacacacacacacacacaactttttctttctctatgatgtaaagtgttacatctgtat 800

                                                                        
Query: 367  aactccaatcaagcatgggggcagaaacttctgaggccaaaactaaagaaaggagcccat 426
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 799  aactccaatcaagcatgggagcagaaacttctgaggccaaaactaaagaaaggagctcat 740

                                                                        
Query: 427  acgctaccatttaacacgtgaatcttgtggagtttctggaaagttcacactgtggctcta 486
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 739  acgctaccatttaacacgtgaatcttgtggagtttctgtaaagttcacactgtggctcta 680

                                                                        
Query: 487  ggttataagcagtgcatgccatgtgctcctctgctcacacaaaatcaatgacttaaaaaa 546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679  ggttataagcagtgcatgccatgtgctcctctgctcacacaaaatcaatgacttaaaaaa 620

                                                                        
Query: 547  ccatagggtggcacaatgaacagatatacgttcaatgcagtaaagatctgcccagatccc 606
            |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 619  ccatagggtggcacaatggacagatatacgttcaatgcagtaaagatctgctcagatccc 560

                                             
Query: 607  atgctggactctgtaagatcttgcgcatggaga 639
            ||||  |||||||||||||||||||||||||||
Sbjct: 559  atgcccgactctgtaagatcttgcgcatggaga 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_b21.g1 MSMg01no478_b21.g1 CHROMAT_FILE:
MSMg01no478_b21.g1 PHD_FILE: MSMg01no478_b21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:57:45 2005
         (661 letters)



>mm_chr1_64012994_64014054
          Length = 1061

 Score = 1224 bits (633), Expect = 0.0
 Identities = 654/661 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccatctgaatgggtggatagttctcagaaaagtcatctcaagtctaacatgacggggt 60
           ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 acccatccgaatgggtggatagttctcagaaaagtcatctcaagtctaacatgatggggt 260

                                                                       
Query: 61  tcgtctctaagcccagcactctggcagaagcaggtgattctttgtttcaattcatcgaaa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgtctctaagcccagcactctggcagaagcaggtgattctttgtttcaattcatcgaaa 320

                                                                       
Query: 121 gctcccgaacagctaaaactgcatagagaggcccagagagagagagacagaaagacagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcccgaacagctaaaactgcatagagaggcccagagagagagagacagaaagacagac 380

                                                                       
Query: 181 agagagacagagagacagagacagagagacagagagacagagagggaaggagggagagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagagacagagagacagagacagagagacagagagacagagagggaaggagggagagag 440

                                                                       
Query: 241 ggagagagaaagagaaaggtagatcaaaagttctcccattatgaacttgttccaattaat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagagagaaagagagaggtagatcaaaagttctcccattatgaacttgttccaattaat 500

                                                                       
Query: 301 taaagatattctgattcactaaatttttttcacttatgatcatttctgtgattgcaaacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taaagatattctgattcactaaatttttttcacttatgatcatttctgtgattgcaaacc 560

                                                                       
Query: 361 ataaactgaatctttattcttcacaatgtatctatttctcctttccatatcttgaaggca 420
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 ataaactgaatctttattcttcacaatgcatctatttctcctttccatatcttgaaggca 620

                                                                       
Query: 421 tggctgattgaagcatatcagaaagcttatattctggcagggtgggggatcttctgataa 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggctgatagaagcatatcagaaagcttatattctggcagggtgggggatcttctgataa 680

                                                                       
Query: 481 tattaacccttttctctttgaagcctgtgcacataccaaaaatcggtagaggcgaagctt 540
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 tattaacccttttctctttgaagcctgtgcacataccaaaaattggtagaggcgaagctt 740

                                                                       
Query: 541 tgcctgaagaatttctaagtccagataaagaagcttgagaaaagttgaaaggccaccata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcctgaagaatttctaagtccagataaagaagcttgagaaaagttgaaaggccaccata 800

                                                                       
Query: 601 tacctgctgcatgccaagaggaatatctgcagtgtcatttgaaagcaaaataagttaccg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacctgctgcatgccaagaggaatatctgcagtgtcatttgaaagcaaaataagttaccg 860

            
Query: 661 t 661
           |
Sbjct: 861 t 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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