Query= MSMg01no478_j08.b1 MSMg01no478_j08.b1 CHROMAT_FILE:
MSMg01no478_j08.b1 PHD_FILE: MSMg01no478_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:20 2005
(414 letters)
>mm_chr1_66656810_66657623
Length = 814
Score = 787 bits (407), Expect = 0.0
Identities = 413/416 (99%), Gaps = 2/416 (0%)
Strand = Plus / Plus
Query: 1 ctagattgtatagatcactaggtatcatcttagaaatataactagtaaaggaatattagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ctagattgtatagatcactaggtatcatcttagaaatataactagtaaaggaatattagt 258
Query: 61 gacagtattttaaagttatagattataggttgctaaaccagttgttgctgacatcagaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gacagtattttaaagttatagattataggttgctaaaccagttgttgctgacatcagaac 318
Query: 121 ttacatatgagaattatctgaaacaaagtttagtgatatgctcgtgtgtgtgtgtgtgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttacatatgagaattatctgaaacaaagtttagtgatatgctcgtgtgtgtgtgtgtgtg 378
Query: 181 tgtgtgtgtgt--acacttgtaaggctttcttcatgtttctcctgatcaccagattcaga 238
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgtgtgtgtgtgtacacttgtaaggctttcttcatgtttctcctgatcaccagattcaga 438
Query: 239 ataatgaaaaaaaaaacctttagagttctcatttatacctgcttcatgctacagaataaa 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ataatgaaaaaaaaaacctttagagttctcatttatacctgcttcatgctacagaataaa 498
Query: 299 gcagactatctgaagatgcacagtgaacctcaagatatgtttgtcattctaccaaggcac 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcagactatctgaagatgcacagtgaacctcaagatatgtttgtcattctaccaaggcac 558
Query: 359 cattcatatttgttgaanacattgcaggcttagatattgttgactgagtttgacag 414
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cattcatatttgttgaaaacattgcaggcttagatattgttgactgagtttgacag 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space: 326025
Effective search space used: 326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_j08.g1 MSMg01no478_j08.g1 CHROMAT_FILE:
MSMg01no478_j08.g1 PHD_FILE: MSMg01no478_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:20 2005
(665 letters)
>mm_chr1_66851814_66852878
Length = 1065
Score = 1255 bits (649), Expect = 0.0
Identities = 661/669 (98%), Gaps = 8/669 (1%)
Strand = Plus / Minus
Query: 1 tttatgcactatcaagatataaactataggggctggtgaaatggctcagcagctaagagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 tttatgcactatcaagatataaactataggggctggtgaaatggctcagcagctaagagc 942
Query: 61 actgactgctcttccgaaggtcctgagttcaaatcccagcaaccacatggtggctcacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 941 actgactgctcttccgaaggtcctgagttcaaatcccagcaaccacatggtggctcacaa 882
Query: 121 ccacccgtaatgagatctgatgccctcttctggtgcatcttggggctacagtgtacttat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 ccacccgtaatgagatctgatgccctcttctggtgcatcttggggctacagtgtacttat 822
Query: 181 atataataattaaaaattaaaaaaaataataaattcagggcagcattaaaaaaaaagata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 atataataattaaaaattaaaaaaaataataaattcagggcagcattaaaaaaaaagata 762
Query: 241 ttttt----tatagactttcatgatttttgctgggttaaggaatttctttcctttgtcct 296
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 ----taaactatagactttcatgatttttgctgggttaaggaatttctttcctttgtcct 706
Query: 297 aaatttcaggagttctttatttccttataagtggatttttacaatctgggaaatgctttt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 aaatttcaggagttctttatttccttataagtggatttttacaatctgggaaatgctttt 646
Query: 357 actatatgagaccctggtttgttttttttgtttgtttgtttgcttttgtttttttaaact 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 actatatgagaccctggtttgttttttttgtttgtttgtttgcttttgtttttttaaact 586
Query: 417 ttgctatggggaatttcagtgattggttaaaaaatgttgaacttgccttgagttcatgaa 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 ttgctatggggaatttcagtgattggttaaaaaatgttgaacttgccttgagttcatgaa 526
Query: 477 atataccatacttgattgggtcacattatcccgtttgtacagtgctgtaattgtacaatc 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 atataccatacttgattgggtcacattatcccgtttgtacagtgctgtaattgtacaatc 466
Query: 537 attgttaaaatagtaattaaataggtatttctactagttataattacatggcagctgatg 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 attgttaaaatagtaattaaataggtatttctactagttataattacatggcagctgatg 406
Query: 597 ggatcaaacaccctcttctggctccctcaggcactacacacacatggcacacagatgtac 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggatcaaacaccctcttctggctccctcaggcactacacacacatggcacacagatgtac 346
Query: 657 atgcaggca 665
|||||||||
Sbjct: 345 atgcaggca 337
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
