BAC Information

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BAC

Clone NameMSMg01-478J20
Chromosome1 (Build37)
Map Location 175,524,784 - 175,656,911
singlet/doubletdoublet
Overlap geneLOC623121, AI447904, E430029J22Rik, LOC665972, AI607873
Upstream geneFcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916
Downstream geneIfi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220, Fmn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478J20.T7 (MSMg01no478_j20.b1)MSMg01-478J20.TJ (MSMg01no478_j20.g1)
ACCAG559689AG559690
length713714
length of high quality
(start - end)		644 (70 - 713)597 (69 - 665)
definitionCHROMAT_FILE: MSMg01no478_j20.b1 PHD_FILE: MSMg01no478_j20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:22 2005CHROMAT_FILE: MSMg01no478_j20.g1 PHD_FILE: MSMg01no478_j20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:22 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(175,524,784 - 175,525,427)(175,656,429 - 175,656,911)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTAATTTACCGACAACTCCACTTGTTGCCGTAAGACATACTAATGATGGT
GTTTCTTAATTTAGAATTGTGGGTAATTTTAAGTGTGGTATTAAGTTTTT
TCTTTGTAACTTTCTACCCATTCCCCTCTATTGGAAGCTACTGTTTCTCC
AAGTAGCTTCTGTGTTTTGTTTTCTTTCCTTGTCCCACCCCAAAGACATC
TACCTCCAAACCCATTACACTTCTTTGTAGGAAAGGAGTTCCCTAAGTTT
CCATCATTTTTATTTTTGCCATTTTATAGGTCCTGATGTATATACTGGGA
AGACTTATCAGCTATGATCACTGCAAGGAGATGGCAAGGTTAGGGAGGGT
AGAGAAAAAGTGGGCATCCAGACTGCTTCTCTCTTACCTTTCTCCATCTC
TTTTCTAAGTATATCAACACGAGCTGCAAGTTCTGGAATGTCTTCACATA
CTTCTATCAGTTTGCTCAATCCAGCATCCTCTGGGAACTTTTCTTCCATT
AAGTCAGCAATGTTAATTCTGTCATAATCATCTTGCATGTTCTTAGTCAG
TTTTAGGTCATGGTTCAGTAAGGACTTAAGTGCTCTAAAGTTATAGTCAT
TCATATATTCTAATCCAGAGAGAAGAACAATTTGCTTGCAGTAATTCACC
ATCTCTCCAGTCA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTAACTTTGTAGTGTTTCATTATGTGCTAAC
ATACCAATTTATTTGTATGCTTGCTTAATGCATAATTTTTTAATTCCATG
CATATGAATATCGTCATGACTTTCTACTTTTTACCTATGCTGTCTTTGGC
TGCACTGGTAAATTTGGTTACACAATAAGTAAACTCAGTGGGTTAAAAAC
TAACACACCAGAACTAAATGTTATAGTGACTTAACCTTTGTGAGATTTAG
AGTGAATCAAGGTGTGCACTGAGAAATTGTGATTCATTTTTAAAGGAGTT
CTGTTTGTATGCATGTGGGTGTGCACATGTGTGTGCATATGTGTGTGTGT
GCATGTGTGTGCATATGTGTGTGTGCATATCTAAGCATGTGTGTTCACAT
GTGTGTGCATGTGTATGCATGTGTTTGTGCACATGTGTGTGTACATGTGT
GTACATCTATGTGTATGTGTGTGCATATGTATCTATATATCTGTATATGT
GTCTGTGTATCTATTTCTTGTGCTATTTCTTTGTTTCTTTATTGTCTGTT
AGTTTGTTTTGTTTTAGTTCTGTTGTTCTGTCTTTTTAATTGCCTGTTTG
TTTTTTAAATTGAGAGAAAGAATAGAGATGTCAGTTTGGGTAGATGAGAA
GTATCTGAGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_j20.b1 MSMg01no478_j20.b1 CHROMAT_FILE:
MSMg01no478_j20.b1 PHD_FILE: MSMg01no478_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:22 2005
         (644 letters)



>mm_chr1_175524584_175525627
          Length = 1044

 Score = 1207 bits (624), Expect = 0.0
 Identities = 639/644 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgttgccgtaagacatactaatgatggtgtttcttaatttagaattgtgggtaattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgttgccgtaagacatactaatgatggtgtttcttaatttagaattgtgggtaattt 260

                                                                       
Query: 61  taagtgtggtattaagttttttctttgtaactttctacccattcccctctattggaagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagtgtggtattaagttttttctttgtaactttctacccattcccctctattggaagct 320

                                                                       
Query: 121 actgtttctccaagtagcttctgtgttttgttttctttccttgtcccaccccaaagacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtttctccaagtagcttctgtgttttgttttctttccttgtcccaccccaaagacat 380

                                                                       
Query: 181 ctacctccaaacccattacacttctttgtaggaaaggagttccctaagtttccatcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctacctccaaacccattacacttctttgtaggaaaggagttccctaagtttccatcattt 440

                                                                       
Query: 241 ttatttttgccattttataggtcctgatgtatatactgggaagacttatcagctatgatc 300
             | |  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtggtgccattttataggtcctgatgtatatactgggaagacttatcagctatgatc 500

                                                                       
Query: 301 actgcaaggagatggcaaggttagggagggtagagaaaaagtgggcatccagactgcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actgcaaggagatggcaaggttagggagggtagagaaaaagtgggcatccagactgcttc 560

                                                                       
Query: 361 tctcttacctttctccatctcttttctaagtatatcaacacgagctgcaagttctggaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctcttacctttctccatctcttttctaagtatatcaacacgagctgcaagttctggaat 620

                                                                       
Query: 421 gtcttcacatacttctatcagtttgctcaatccagcatcctctgggaacttttcttccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcttcacatacttctatcagtttgctcaatccagcatcctctgggaacttttcttccat 680

                                                                       
Query: 481 taagtcagcaatgttaattctgtcataatcatcttgcatgttcttagtcagttttaggtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagtcagcaatgttaattctgtcataatcatcttgcatgttcttagtcagttttaggtc 740

                                                                       
Query: 541 atggttcagtaaggacttaagtgctctaaagttatagtcattcatatattctaatccaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 atggttcagtaaggacttaagtgctctaaagttatagtcattcatatattctaatccaga 800

                                                       
Query: 601 gagaagaacaatttgcttgcagtaattcaccatctctccagtca 644
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagaagaacaatttgcttgcagtaattcaccatctctccagtca 844


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no478_j20.g1 MSMg01no478_j20.g1 CHROMAT_FILE:
MSMg01no478_j20.g1 PHD_FILE: MSMg01no478_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:22 2005
         (597 letters)



>mm_chr1_175656429_175657425
          Length = 997

 Score =  934 bits (483), Expect = 0.0
 Identities = 483/483 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtaactttgtagtgtttcattatgtgctaacataccaatttatttgtatgcttgcttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tgtaactttgtagtgtttcattatgtgctaacataccaatttatttgtatgcttgcttaa 424

                                                                       
Query: 61  tgcataattttttaattccatgcatatgaatatcgtcatgactttctactttttacctat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 tgcataattttttaattccatgcatatgaatatcgtcatgactttctactttttacctat 364

                                                                       
Query: 121 gctgtctttggctgcactggtaaatttggttacacaataagtaaactcagtgggttaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gctgtctttggctgcactggtaaatttggttacacaataagtaaactcagtgggttaaaa 304

                                                                       
Query: 181 actaacacaccagaactaaatgttatagtgacttaacctttgtgagatttagagtgaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 actaacacaccagaactaaatgttatagtgacttaacctttgtgagatttagagtgaatc 244

                                                                       
Query: 241 aaggtgtgcactgagaaattgtgattcatttttaaaggagttctgtttgtatgcatgtgg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aaggtgtgcactgagaaattgtgattcatttttaaaggagttctgtttgtatgcatgtgg 184

                                                                       
Query: 301 gtgtgcacatgtgtgtgcatatgtgtgtgtgtgcatgtgtgtgcatatgtgtgtgtgcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gtgtgcacatgtgtgtgcatatgtgtgtgtgtgcatgtgtgtgcatatgtgtgtgtgcat 124

                                                                       
Query: 361 atctaagcatgtgtgttcacatgtgtgtgcatgtgtatgcatgtgtttgtgcacatgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atctaagcatgtgtgttcacatgtgtgtgcatgtgtatgcatgtgtttgtgcacatgtgt 64

                                                                       
Query: 421 gtgtacatgtgtgtacatctatgtgtatgtgtgtgcatatgtatctatatatctgtatat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  gtgtacatgtgtgtacatctatgtgtatgtgtgtgcatatgtatctatatatctgtatat 4

              
Query: 481 gtg 483
           |||
Sbjct: 3   gtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 997
Length adjustment: 10
Effective length of query: 587
Effective length of database: 987
Effective search space:   579369
Effective search space used:   579369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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