BAC Information

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BAC

Clone NameMSMg01-478K08
Chromosome1 (Build37)
Map Location 168,842,259 - 169,048,798
singlet/doubletdoublet
Overlap geneLOC622102, C030014K22Rik
Upstream genePou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895
Downstream geneUck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a, LOC100039879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478K08.T7 (MSMg01no478_k08.b1)MSMg01-478K08.TJ (MSMg01no478_k08.g1)
ACCAG559713AG559714
length717727
length of high quality
(start - end)
325 (315 - 639)323 (316 - 638)
definitionCHROMAT_FILE: MSMg01no478_k08.b1 PHD_FILE: MSMg01no478_k08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:24 2005CHROMAT_FILE: MSMg01no478_k08.g1 PHD_FILE: MSMg01no478_k08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,842,259 - 168,842,583)(169,048,476 - 169,048,798)
sequence
XXXXXXXXXXXXXXXXXXXXXXXCAATACGTAGCAGAGCGCNGGAATCCT
GCATGCTAAATAAGAGTTCACCCTAGTCTCTTCTTCCCTCTGGGGGTGAC
CTCATACCCCACTGTAACCTAAATTAGTTGAAAAGTTCAACCTTTTTAAG
AGCTCCAGTGTCCACTAACTAGCCTGGGTATATACTCTACAAGTATTCAC
TGAGCCAAGATTGGAACATAGTCCTCAGGTCCAGAGCCTTTTTTTTCCTA
TAACACTGTGCAATGGAAAAGCATGCTCTGTTTACACAAAGTGTTCTCCT
TGCATANNGTCANTTATTAACCAGCAGCTGCCTTACAAGACTTTTTCATA
ATCACAGATATCCAGTGCCCACTCCAGATTCTCCTTGAACCATAGAATCC
TAGGATAAGACCCAATGGTCTACATTTTTAACAAGCTTCAAGTGTAACTC
TGAGGCAGAGTCAGGTTTTGAGGCTCCCCTTTGTAACACAAAGGTCTTAG
AACTGAGATGCAGAGCAGTCATGCCCATACAAACCATCCACTCTTCTGTT
GAGTGTTCAGTCTTCCTCACAACATGCTGCTCCAGGCACACAGACATGGG
ACTCCAATAGGAAAATGTTAGCGGTGGTAACTACTTAAGATTTTTATCCG
CAGAGAGATAGAGACCAGAGATTCCAGGAGGCCTGGCATGGAGGGCCTGA
GTCTCATGTTCCTTCTT
GTGTGAGGCCTGGAGGNCGCCTGGTTCGTATTGTGGGGTNGAACNACACA
TTTTCCAACTCAAGGCGAGAAGACAGNCGGGGCTAGCACATGGCAATAGG
TCAAGAAATGCCCCAAGATTCATTAGGCTCTTGCGATTCCTCTACTTGGT
GACATTGTCTGCCCCCAGACTCCCCCCAACCAGCCTAAGTTGCCATGATG
GCTCGGCTGAATAAATGCTTCCTGGAGACAATCTTGCATGTTTAGGCATT
TCAAAATTATAAATTTAGTGATGCCATGTGCCAGCTTATCAATCTCTACA
TCCTCTTGNCTTAGAATCTGAGTTGTGTTTCTGTCATGAACCCCAAGGGT
TCTGCAGGCTTTGACCCATCTCTTCAACAATGTCTCTTCTGGCTTTGCTT
TGAGTTTCTTTCAGTTCCTCTACCGCATTCCCTTTAGGTCTATACATACT
TTCCCTTTTCAATGAAGAATTCCTTCCTATCAAGTTCCTTTGTTCTATTT
AACTTTGTCTGTCAAGTTGACATAGCCTAAAGTTGCCCAAGATGGGAGTC
TCAATTGAGGAACAGAGCCAGTTGGCCTGTGAGCATGTCTAGGGGTAAGG
GATTGTCTTGATTGTTGATTGCTGTGGGAGTGCCCATCCCACTGTGGGCA
GCACCAACGCTGGCCAGATGGTCCTGAGCTATCTAAGAAAGCTAGCTAAG
CCTGAGCTTTCGATTGAGCCAGCAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_k08.b1 MSMg01no478_k08.b1 CHROMAT_FILE:
MSMg01no478_k08.b1 PHD_FILE: MSMg01no478_k08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:24 2005
         (325 letters)



>mm_chr1_168842059_168842783
          Length = 725

 Score =  598 bits (309), Expect = e-175
 Identities = 321/325 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattaaccagcagctgccttacaagactttttcataatcacagatatccagtgcccactc 60
           |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 201 tattaaccagcagctgccttacaagactttttcagaaccacagatatccagtgcccactc 260

                                                                       
Query: 61  cagattctccttgaaccatagaatcctaggataagacccaatggtctacatttttaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagattctccttgaaccatagaatcctaggataagacccaatggtctacatttttaacaa 320

                                                                       
Query: 121 gcttcaagtgtaactctgaggcagagtcaggttttgaggctcccctttgtaacacaaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttcaagtgtaactctgaggcagagtcaggttttgaggctcccctttgtaacacaaagg 380

                                                                       
Query: 181 tcttagaactgagatgcagagcagtcatgcccatacaaaccatccactcttctgttgagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcttagaactgagatgcagagcagtcatgcccatacaaaccatccactcttctgttgagt 440

                                                                       
Query: 241 gttcagtcttcctcacaacatgctgctccaggcacacagacatgggactccaataggaaa 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttcagtcttcctgacaacatgctgctccaggcacacagacatgggactccaataggaaa 500

                                    
Query: 301 atgttagcggtggtaactacttaag 325
           ||||||||||||||| |||||||||
Sbjct: 501 atgttagcggtggtacctacttaag 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no478_k08.g1 MSMg01no478_k08.g1 CHROMAT_FILE:
MSMg01no478_k08.g1 PHD_FILE: MSMg01no478_k08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:24 2005
         (323 letters)



>mm_chr1_169048405_169049127
          Length = 723

 Score =  594 bits (307), Expect = e-174
 Identities = 319/323 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctgagttgtgtttctgtcatgaaccccaagggttctgcaggctttgacccatctcttc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 394 atctgagttgtgtttctgtcatgaaccccaagggttctgcaagctttgacccatctcttc 335

                                                                       
Query: 61  aacaatgtctcttctggctttgctttgagtttctttcagttcctctaccgcattcccttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aacaatgtctcttctggctttgctttgagtttctttcagttcctctaccgcattcccttt 275

                                                                       
Query: 121 aggtctatacatactttcccttttcaatgaagaattccttcctatcaagttcctttgttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 aggtctatacatactttcccttttcaatgaagaattccttcctatcaagttcctttgttc 215

                                                                       
Query: 181 tatttaactttgtctgtcaagttgacatagcctaaagttgcccaagatgggagtctcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 tatttaactttgtctgtcaagttgacatagcctaaagttgcccaagatgggagtctcaat 155

                                                                       
Query: 241 tgaggaacagagccagttggcctgtgagcatgtctaggggtaagggattgtcttgattgt 300
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 154 tgagggacagagccagttggcctgtgagcatgtctaggggtaagggattgtcttgattat 95

                                  
Query: 301 tgattgctgtgggagtgcccatc 323
           |||||||||| ||||||||||||
Sbjct: 94  tgattgctgtaggagtgcccatc 72


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)