Query= MSMg01no478_n19.b1 MSMg01no478_n19.b1 CHROMAT_FILE:
MSMg01no478_n19.b1 PHD_FILE: MSMg01no478_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:40 2005
(431 letters)
>mm_chr1_73084542_73085373
Length = 832
Score = 789 bits (408), Expect = 0.0
Identities = 426/432 (98%), Gaps = 1/432 (0%)
Strand = Plus / Minus
Query: 1 gagacataagatacactgctgtttgtgggagctgggaagaatagaattctctcaagagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 gagacataagatacactgctgtttgtgggagctgggaagaatagaattctctcaagagcc 573
Query: 61 tctttgtaagtgtcaagatgggacactgggcctcctgtgtgctgtacccacaaactaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tctttgtaagtgtcaagatgggacactgggcctcctgtgtgctgtacccacaaactaaag 513
Query: 121 ttgtgttccaccagccctagctggaccctggttgtgctgtgcatccttcactgagtcaga 180
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 512 ttgtgttccaccagccctagctggaccctggttgtgctgtgcatcctttactgagtcaga 453
Query: 181 gagaggtgaaagatctgcaagtctgaccggtttctttctcggtgaagtacatgctgctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gagaggtgaaagatctgcaagtctgaccggtttctttctcggtgaagtacatgctgctgg 393
Query: 241 cccaggcacaagaggacctgctgtcatggtctctgtccacactgagcacatctgtcagta 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 392 cccaggcacaagaggacctgctgtcacggtctctgtccacactgagcacatctgtcaata 333
Query: 301 cacagctagtctctaagctgttcctcaggtccttctccccactgaggagacagactctac 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cacagccagtctctaagctgttcctcaggtccttctccccactgaggagacagactctac 273
Query: 361 ccggggagtcgcagccatttctctcccc-acagtctagggtggaacagctcagagacgtg 419
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 272 ccggggagtggcagccatttctctcccccacagtctagggtggaacagctcagagacgtg 213
Query: 420 agacctcctggc 431
||||||||||||
Sbjct: 212 agacctcctggc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 832
Length adjustment: 9
Effective length of query: 422
Effective length of database: 823
Effective search space: 347306
Effective search space used: 347306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no478_n19.g1 MSMg01no478_n19.g1 CHROMAT_FILE:
MSMg01no478_n19.g1 PHD_FILE: MSMg01no478_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:40 2005
(668 letters)
>mm_chr1_72894227_72895297
Length = 1071
Score = 1120 bits (579), Expect = 0.0
Identities = 643/671 (95%), Gaps = 13/671 (1%)
Strand = Plus / Plus
Query: 1 actctttagaccaggttggtctctaactcacagagatccacctgcctctgcctctcaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctttagaccaggttggtctctaactcacagagatccacctgcctctgcctctcaagt 260
Query: 61 gcttggattaaaggcatgtgccagcatctcctggcttcacgtagttttttattaggactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttggattaaaggcatgtgccagcatctcctggcttcacgtagttttttattaggactt 320
Query: 121 tgtgggcttgtgtttctggatggctggggtggggctaagacgccttgacttttagagcat 180
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 tgtggtcttgtgtttctggatggctggggtggggctaagacgccttgacttttagaacat 380
Query: 181 gctgggacttgtccccctggtctcagactgaccacacaa---ttccctggagagacattt 237
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 gctggtacttgtccccctggtctcagactgaccacacaacccttccctggagagacattt 440
Query: 238 gtcatctcgtctgagactgggaactaggggctgcttttagtgtttgcatgcacacagttg 297
|||| || | ||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 441 gtcagctaggctgagactgggaactaggggctgctttgagtgtttgtgtgcacacagttg 500
Query: 298 gctctatgagagtgattctcaatggcaggtggctgcctgccttgcagtcccttgccagct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctctatgagagtgattctcaatggcaggtggctgcctgccttgcagtcccttgccagct 560
Query: 358 gtgccccagcccagagatcttgtggtagtagttttttaaacctcaactagtctgccatga 417
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgccccagcccagggatcttgtggtagtagttttttaaacctcaactagtctgccatga 620
Query: 418 tcggaccataaaggaagaacttaaacttggggttagtggagagtgagcgcgatattttct 477
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct: 621 tcggaccataaaggaaggacttaaacttggggttagtggagagtgagcacgatattttct 680
Query: 478 gatggatccagggatgacctactcccctgttgagggccttgtgtctgtcttcatcctttg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gatggatccagggatgacctactcccctgttgagggccttgtgtctgtcttcatcctttg 740
Query: 538 gtgcttctaggtcgcagcttggagggtgaggggagaactgagcttggatctccccatttc 597
|| | ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 741 gt--t--------gcagcttggagggtgagggaagaactgagcttggatctccccatttc 790
Query: 598 tctctgcagtcacacagcctgagttcaactcctgatctatccatcacttaacagggctgt 657
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 791 tctctgcagtcacacagcctgagttcaactcctgatccatccatcacttaacaggcctgt 850
Query: 658 gatctcgctca 668
|||||||||||
Sbjct: 851 gatctcgctca 861
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1071
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1061
Effective search space: 698138
Effective search space used: 698138
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
