Query= MSMg01no479_d20.b1 MSMg01no479_d20.b1 CHROMAT_FILE:
MSMg01no479_d20.b1 PHD_FILE: MSMg01no479_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:09 2005
(648 letters)
>mm_chr1_92012767_92013813
Length = 1047
Score = 1156 bits (598), Expect = 0.0
Identities = 634/646 (98%), Gaps = 3/646 (0%)
Strand = Plus / Plus
Query: 4 ggaattcctcattctc-tctatgtctgtcagctccggggccaccctcttagtccactgat 62
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctcatt-tcatctatgtctgtcagctccggggccaccctcttagtccactgat 262
Query: 63 ctatgcagatgctctcttattagcaccaagcagttaccttatttttctttataatgcact 122
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 263 ctatgcagatgctctcttattagcaccaagcagtt-ccttatttttctttataatgcact 321
Query: 123 ttagaatatgtggccatttgttcttcctccttgctcttagtttcatattttaatcctaat 182
|||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 322 ttagaatatgcggccatttgttcttcctcctttctcttagtttcgtattttaatcctaat 381
Query: 183 gactttaataattatatttcacgtgcaacaaataatcctgttgggatttttaattgaaac 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gactttaataattatatttcacgtgcaacaaataatcctgttgggatttttaattgaaac 441
Query: 243 tgtgttatccctataaatctccagggggaggggcgcagttcaccatctttccatctcgct 302
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 442 tgtgttatccctataaatctccagggggaggggcgcggttcaccatctttccatctcgct 501
Query: 303 ggagcagagcccacctctccatctctccccgtgactcttgcttctgaccatcatggatgc 362
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 502 ggagcagagcccacctctccatctctccctgtgactcttgcttctgaccatcatggatgc 561
Query: 363 ttcccatgaatgggctgcctgacaatatttaatagtacagcttcatgctttccgtcggac 422
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||
Sbjct: 562 ttcccatgaatgggctgcctgacaatatttaatagtacagcttcctgctttctgtcagac 621
Query: 423 atttattcttgttatctcccctttgtatgatcctggttatcaatacacattgcaccagtt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 atttattcttgttatctcccctttgtatgatcctggttatcaatacacattgcaccagtt 681
Query: 483 atgcgtaggtagggacaaaggttgtgcctgtcgcctgtgaagtgtgtctccactgaggac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atgcgtaggtagggacaaaggttgtgcctgtcgcctgtgaagtgtgtctccactgaggac 741
Query: 543 tgggtatctttgatccattcacccaccctgctcattgacagtaggctcactgagtttgtg 602
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 742 tgggtatctttgatccattcacccaccctgctcattgacagtaggctcattgagtttgtg 801
Query: 603 tggtgtgctaaacagtgtctggggccctgagaaaaatcagcaggta 648
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 tggtgtgctaaacagtgtctggggccctgagaaaaatcagcaggta 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1047
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1037
Effective search space: 661606
Effective search space used: 661606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_d20.g1 MSMg01no479_d20.g1 CHROMAT_FILE:
MSMg01no479_d20.g1 PHD_FILE: MSMg01no479_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:10 2005
(638 letters)
>mm_chr1_92162616_92163653
Length = 1038
Score = 733 bits (379), Expect = 0.0
Identities = 405/417 (97%), Gaps = 8/417 (1%)
Strand = Plus / Minus
Query: 1 cagagccacagcaaagggccttgccctctgataaaataattttaatcattagttgtcagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagagccacagcaaagggccttgccctctgataaaataattttaatcattagttgtcagt 394
Query: 61 ggtttttgctattagtttctagtgaccctaacagaaacttgacaggattctaatatccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ggtttttgctattagtttctagtgaccctaacagaaacttgacaggattctaatatccct 334
Query: 121 agattatgttttatgacttgttgaagagttataaaggtgattcataactaatggatttag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 333 agattatgttttatgacttgttgaagagttataaaggtgattcataactaatggatttgg 274
Query: 181 ttttatgttatttgtaagtaatgtaactacatcttttttatttctaatacatgagcctag 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttttaggttatttgtaagtaatgtaactacatcttttttatttctaatacatgagcctag 214
Query: 241 tctgaaggcattgtttctttctctctttctttctctttttctttctttctctcttttttc 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 213 tctgaaggcattgtttctttctctct------ctctttttctttctttctctcttttttc 160
Query: 301 tttctttctcttcttttttcttcctttctttctttttcctttctttctttcctttctttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 tttctttctcttcttttttcttcctttctttctttttcctttctttctttcctttctttt 100
Query: 361 ttccttccttccttcctttcttc-tttctttctttctttctttctttctttctttct 416
|||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct: 99 ttcctttcttccttccttccttccttt-tttctttctttctttctttctttctttct 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space: 645584
Effective search space used: 645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
