Query= MSMg01no481_a10.b1 MSMg01no481_a10.b1 CHROMAT_FILE:
MSMg01no481_a10.b1 PHD_FILE: MSMg01no481_a10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:31 2005
(707 letters)
>mm_chr1_106661310_106662416
Length = 1107
Score = 1172 bits (606), Expect = 0.0
Identities = 665/706 (94%), Gaps = 37/706 (5%)
Strand = Plus / Minus
Query: 4 gaattctctcacatt-t-tcccttgaaaattatggcattagctttgcagatttttaggct 61
||||||||||||||| | | ||||||||||||||||| |||||||||||||||||||||
Sbjct: 1087 gaattctctcacattgtgt--cttgaaaattatggcatcagctttgcagatttttaggct 1030
Query: 62 ggtcagttcttctatgtgtctgtctgtctatctatctatctatctatctatctatctatc 121
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 ggtcagttcttctatgtgtgtgtctgtctatctatctatctatctatctatctatctatc 970
Query: 122 tatctatctatctatgtatctatctatctatctatctatctatctatctatctacctatc 181
|||| |||||||||||||||||| |||||
Sbjct: 969 tatc-----atctatgtatctatctat----------------------------ctatc 943
Query: 182 tatctatctatctatctatctattgatttatctatgtagaatatataattcttttttaga 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 tatctatctatctatctatctattgatttatctatgtagaatatataattcttttttaga 883
Query: 242 caacctagacaatatacatgaaaatacataaatacttctgcttataaatttaccgtcaac 301
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 882 caacctagacaatatacatgaaaatacataaatactactgcttataaatttaccgtcaac 823
Query: 302 atcaaatatctgtatcctgtctaattgcctaacaaatattacacaataaaacttaatctt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 atcaaatatctgtatcctgtctaattgcctaacaaatattacacaataaaacttaatctt 763
Query: 362 ttaaacatttttcagactcattctaataagaataagcataattttcagttttatcatgag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ttaaacatttttcagactcattctaataagaataagcataattttcagttttatcatgag 703
Query: 422 ttattagatttagataaagttttgtttttagttaactaaaagatggactataatatttag 481
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 702 ttattagatttagataaagttttgtttttagtgaactaaaagatggactataatatttag 643
Query: 482 agttaggcagaatttatagatgctgcataaagagagagactataatttcagcttataatt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agttaggcagaatttatagatgctgcataaagagagagactataatttcagcttataatt 583
Query: 542 gaaaaatggtcaagttaaattagatctccaaatccaacagttagtgaatatgcaccaaat 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gaaaaatggtcaagttaaattagatctccaaatccaacagttagtgaatatgcaccaaat 523
Query: 602 gtaaggtattaatgctgatattttctgtaaaagttcatagctaaatcaatttaaacaatt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gtaaggtattaatgctgatattttctgtaaaagttcatagctaaatcaatttaaacaatt 463
Query: 662 gtaacctgctgtgttttataccatgaaatgttatgttgttcaaaat 707
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gtaacctgctgtgttttataccatgaaatgttatgttgttcaaaat 417
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 120
Number of extensions: 33
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1107
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1097
Effective search space: 764609
Effective search space used: 764609
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_a10.g1 MSMg01no481_a10.g1 CHROMAT_FILE:
MSMg01no481_a10.g1 PHD_FILE: MSMg01no481_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:31 2005
(680 letters)
>mm_chr1_106515561_106516640
Length = 1080
Score = 1307 bits (676), Expect = 0.0
Identities = 679/680 (99%)
Strand = Plus / Plus
Query: 1 catggatccttttttgcaaaacagaaacaatacactaattgctccttttctaggtgaacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catggatccttttttgcaaaacagaaacaatacactaattgctccttttctaggtgaacc 260
Query: 61 ttatatattttaggtgacacttggatcctaaatctcatcttaaatatttataatgagaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttatatattttaggtgacacttggatcctaaatctcatcttaaatatttataatgagaga 320
Query: 121 aaactaagtaggcaacatgctccataattaagcctgaatttcctctcatttcatgacagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactaagtaggcaacatgctccataattaagcctgaatttcctctcatttcatgacagg 380
Query: 181 tcgcaccaactgttctctaagttactcctagttctatgatgttaagttggtacctacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgcaccaactgttctctaagttactcctagttctatgatgttaagttggtacctacatc 440
Query: 241 atggccctgagttaagtgaagagcacagatgtatatgcattacttcatgagcagatcagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggccctgagttaagtgaagagcacagatgtatatgcattacttcatgagcagatcagc 500
Query: 301 ttccataagtgctgttttggatgattatcttaattacttcacctcagacctatttcctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccataagtgctgttttggatgattatcttaattacttcacctcagacctatttcctct 560
Query: 361 aaagagaaattttagctacaaatcagcaaaggttatttaccatcctcttgccttttctct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaagagaaattttagctacaaatcagcaaaggttatttaccatcctcttgccttttctct 620
Query: 421 gtgacttagttgcatatagtgattttgcaatatggttatcatgttatcatgatgaatcaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgacttagttgcatatagtgattttgcaatatggttatcatgttatcatgatgaatcaa 680
Query: 481 ttaatacccaagtaaacagtatgtttgaaaaagtgaaaagatatttaggatgtttcaagg 540
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 ttaatacccaagtaaacagtatgtttgaaaaagtgaaaagatatttgggatgtttcaagg 740
Query: 541 aagaagtgcatctgtattttcaaggacgtatgtaataaatattaaccactggaagacaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aagaagtgcatctgtattttcaaggacgtatgtaataaatattaaccactggaagacaga 800
Query: 601 acataatttaaaatcctcatgttgaattctccagagagagatatcatttccttcagtcct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acataatttaaaatcctcatgttgaattctccagagagagatatcatttccttcagtcct 860
Query: 661 gtgacttttccaggtgagtc 680
||||||||||||||||||||
Sbjct: 861 gtgacttttccaggtgagtc 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space: 716900
Effective search space used: 716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
