XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTC
ACTTCCAATCGGCTTCCTTGGAAAACCTTACCACTGTAGTATCATGGATA
ATAGCTTATCATGGATAATTACATTTTTACAAACGGTAGAGAAAATCATT
TTGCTACACACATAGTACTTTCCAGCCGGGCCAGCTTCTCAATCTTTTAC
AGCTTTCATGTGTTAAGGCTCATGTTTTCTTTGTTTGTTTTAAAATATAC
TATCACTAATAATAGGTCTGTCCTATGATCAGTCTCCAAGTAGAAGATAC
CACGGAAGATACCCTTTCCTACTGCCCCAAGTCAAACATCTGATACTTTT
GTAAAACATGGTAGTCCTCATGCTTCTCATTAAATGGGCTATGGCAACCA
AATTTTTATGCAGATTTCTAAAAGCTTTGGTCATTTTTCAGCTTGTTGCT
GTGTATAATAGAATGAACTGTGTTTAGTGGCAAGTCATTGAAAAGTTTAA
AAATAAAAATAAAAATTGGGGAGATGGCCAGAGGAGAAAAACTGCCATTG
ATGTCTTTGCCACTGCTATCCAGTGGTGCGAATTTTGGCGGGCCTCCCAC
CTGCTCTGCTAACCCATTACCTGCAGTCAGGTTCTATGGAGCAGGAAAAA
CTACCTTAGGGACAGGACTCTTTCCTTAACCCCTTCTGAGCAGATACAGT
ACTTCATTTTGAANATGAAACTGACTCCCCCGAGGCCTTTGAGACTTTAA
TAATACACNATAAATAAAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCAAAAGAGGAAATAGAAATGGCTGAGAAGAA
CTTAAAGAAATTGTTAATGTCCTAGTCATAAGAGAAATGCAAATAAAAAC
GACTTTGAGATTTACTCTTACACCAATCAGAATGGCCAAGATCTATAAAA
TAAATAAAGCTCATGCTGGCGAGGATGTGGAGTAAGAAGAATACTCAAAC
ATTGCTGGTGGGAGTGCAAGCAGGTATGGCCACTGCGAAAATCAGTGTGG
TTGTTCCTCAATAAGATGGGAATCAATCAACTTCAAGATCCAGTTACCCC
ACTCTTGGGCATACACCCAAAAGACACTTCATCCAACTACAGAGACACCT
GCTCAGCAAGCTTCACTGTTCCTCTATTCTTAGTAGCCAGAAATTGGAAA
CAACTCAGATGTCCCTCAACAGAAGAATGGAGGAAAGAACATGTGCTACA
TTTATACATGGAATATCACTTAATCATTTAAAAAGGAAATTATGAAATCC
ACAGATAAATGGATGGAACTAGAAAAAATAAATCATTCTGAGACTCAGAA
AGACAAATGGGATATATATTCACTTATATGTGATGTTAGCTGTTAAGTCA
TTTGTAAGCAAACTGGAATCCATAGAACCACAGGGTTTAGGTAGAGAGTA
AGGGACTAAGGGAGATGGATGGATCTCCTTAGAAAAGATAAATAGGATAG
ATAATTATGGATTGATGTGAGGGA

Query= MSMg01no481_d02.b1 MSMg01no481_d02.b1 CHROMAT_FILE:
MSMg01no481_d02.b1 PHD_FILE: MSMg01no481_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:44 2005
         (699 letters)



>mm_chr1_56872976_56874074
          Length = 1099

 Score = 1241 bits (642), Expect = 0.0
 Identities = 654/658 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctcacttccaatcggcttccttggaaaaccttaccactgtagtatcatggataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gaattcctcacttccaatcggcttccttggaaaaccttaccactgtagtatcatggataa 599

                                                                       
Query: 65  tagcttatcatggataattacatttttacaaacggtagagaaaatcattttgctacacac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 tagcttatcatggataattacatttttacaaacggtagagaaaatcattttgctacacac 539

                                                                       
Query: 125 atagtactttccagccgggccagcttctcaatcttttacagctttcatgtgttaaggctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 atagtactttccagccgggccagcttctcaatcttttacagctttcatgtgttaaggctc 479

                                                                       
Query: 185 atgttttctttgtttgttttaaaatatactatcactaataataggtctgtcctatgatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atgttttctttgtttgttttaaaatatactatcactaataataggtctgtcctatgatca 419

                                                                       
Query: 245 gtctccaagtagaagataccacggaagataccctttcctactgccccaagtcaaacatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gtctccaagtagaagataccacggaagataccctttcctactgccccaagtcaaacatct 359

                                                                       
Query: 305 gatacttttgtaaaacatggtagtcctcatgcttctcattaaatgggctatggcaaccaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gatacttttgtaaaacatggtagtcctcatgcttctcattaaatgggctatggcaaccaa 299

                                                                       
Query: 365 atttttatgcagatttctaaaagctttggtcatttttcagcttgttgctgtgtataatag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atttttatgcagatttctaaaagctttggtcatttttcagcttgttgctgtgtataatag 239

                                                                       
Query: 425 aatgaactgtgtttagtggcaagtcattgaaaagtttaaaaataaaaataaaaattgggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aatgaactgtgtttagtggcaagtcattgaaaagtttaaaaataaaaataaaaattgggg 179

                                                                       
Query: 485 agatggccagaggagaaaaactgccattgatgtctttgccactgctatccagtggtgcga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 178 agatggccagaggagaaaaactgccattgatgtctttgccactgctatccagtggtgtga 119

                                                                       
Query: 545 attttggcgggcctcccacctgctctgctaacccattacctgcagtcaggttctatggag 604
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 118 attttggcgggcctgccacctgctctgctaacccattacctgcagtcaggttctacggag 59

                                                                     
Query: 605 caggaaaaactaccttagggacaggactctttccttaaccccttctgagcagatacag 662
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 58  caggaaaaactaccttagggacaggactctttccttaaccctttctgagcagatacag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)