BAC Information

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BAC

Clone NameMSMg01-481F06
Chromosome1 (Build37)
Map Location 20,893,088 - 20,893,593
singlet/doubletsinglet
Overlap genePaqr8
Upstream genePkhd1, Il17a, Il17f, Mcm3
Downstream geneEfhc1, Tram2, LOC100040291, Tmem14a, Gsta3, EG632802, EG241041, LOC100040309, Ndg1, BC099381, LOC100040319, AU024076, Kcnq5, D1Mgi28
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481F06.T7 (MSMg01no481_f06.b1)MSMg01-481F06.TJ (MSMg01no481_f06.g1)
ACCAG561760AG561761
length7761,199
length of high quality
(start - end)
460 (38 - 497)---
definitionCHROMAT_FILE: MSMg01no481_f06.b1 PHD_FILE: MSMg01no481_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:56 2005CHROMAT_FILE: MSMg01no481_f06.g1 PHD_FILE: MSMg01no481_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGT
TAGTATTGTGGTTCTCCAAGCATAGAGACATATCACATAATTACAGACAG
TGTTTTCTATTTCATAAGTCAAGATTTTTATGGAGCTGCAATGTCTACAC
AGAGTCTATTAAGTGAATGACTATGGTATAGTCATGGGTCCCTATTTGTC
CTCCTCTATGTAATTCCCTCTTCTGTACATGTCTTGTGACAGTGTGTTTC
TTATACCAAAAGAAAAATTATACATAAAGTGTAAAGAGAACACACAGCCC
AATTCAAGTCTTTGAACCACTGTTATTATTATGATAATGTCAGCTGAAAA
GCACTGTCAGCTTGCAAGTGTGTATGAATGTGTGTGAATGTACGTGTGTA
TGTGTATGTGTGTGCAAATAAATGTGTGTGTGTGTGAATGCATGTGTGAA
TGTGTGTGTATGGGTGTGTGAATGTAAGTATGTATGTAAATGTATGTGTG
GTATGTGTATGTGCGNGAGAAAAAATGTGTGCAGGTCACATACACGGGAA
AAGCCATCAGAATAACAGCTGACTTCTCAATGGAAACTTTGAAAGCCAGA
ACAGCCTAGAGAAAAGCATTCCAAGTCGTCAAAGACTATGACAGTCAACT
TAATATATTCCGCAAAACCATGTGCCATGATTGAAAGGAAAAGAAAAATG
TATTAGGACATAAACAGCCTAAATAATTGTTCCCAGTAAACAAACCCAAC
CGAGAAAATACTGGAAGCTTTATTTG
ATAGAGTAGCGCTGGCCAGAACAGCTGAGCGCTCTTCTCGCACGCATCAG
GAGTGTCTCCGCGCGCGTCTTCCCCTCACTTCTCCTTCCCTCCCTCTATC
CACCTATCACCCTCATTACGCCCCTCTCTATATCACGGCATTTGATCCTC
TCTAGCCACCTCGCAGCCGCGTACTCGCGTAATTATTCAAATGTAGCATA
CCACAATATATACACTGCAATAGGAGTATATTCCTCTTCGTCTCGATGAC
ATTAGACTCTATGGGTGTTTGATTGGCCCCGGTTGCAGTGTCTTCGCGAC
CAGTCCTAGTCAGTCACATAGCTCACTATCCCCTCTCACTGTCACATACT
CCCTCACTCTTCCATCGTTTTCCCTTCTCACCTGATCCCTTACAGCGCCG
GCTGCATACCGCCACATCCTCCGTCGTGCTCTACCTGCATGTCCGGCCCC
TCTGTATGCGTCGGGTGCTCCCTGGGCGTGTGATCACGTCGCTTTGTGCC
GGTCTCTGTCTGCGGTTCAGTTGACGCGCTCGGGGTGCGGGGTGGGTGGT
AAATAGTCTTATCATCCTATAGACTTACAATCACGATTCGCTCATACTGT
TACGTAAGACTATGCGAGTCGTAGACGCGGTGTGTTGATAGTAGGTGTAT
GTCGGTATCGGCATCTTCTAGTTACATCGTAGCTGCGACGCATGAGGTGA
CTAAAGTGACGTCGAAACCCCAGTATACTCGTTACGTGTACGCTATGAAC
CGTGTAGCATTACACGTTACTCGCGAAGCATAAGATCGATGCGAACGAAC
GAGACCCGATCAAGATTTCAGTAACCCATCGACTGTCGACCTGTCCGTGA
CTCGCACAGTTCTGTGTTGTCTCTTGTTGTCCTTGTCTCTCGATGTGATC
ACCTTAACCGCACGATTGTTGCACCCCCGTTTATTTCGCTACTCGACTCA
TTCAATATCACACCATCCAACCAATTATTCATGGTATATGTGGTACGTGC
TTGTGTTTCGTTCCCCGACTGTGTGATCATCAGTCGTCTAGTACCTGAGT
CGACGTGCACGTCAGTCGCTCATCTGTTCGTCTTTCTCACGCGTGGGTCG
TGTATGGATGATGATCGGTGTGGGCGGCGTAGATTTCGCGTATTATAATC
AGGCAGTAATGATATTGATATATGCAGCGCGATNGTATATGTACTGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_f06.b1 MSMg01no481_f06.b1 CHROMAT_FILE:
MSMg01no481_f06.b1 PHD_FILE: MSMg01no481_f06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:56 2005
         (460 letters)



>mm_chr1_20893063_20893923
          Length = 861

 Score =  677 bits (350), Expect = 0.0
 Identities = 445/508 (87%), Gaps = 53/508 (10%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagttagtattgtggttctccaagcatagagacatatcacataattacagacag 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ggaattcagttagtacagtggttctccaagcatagagacatatcacataattacagacag 472

                                                                       
Query: 64  tgttttctatttcataagtcaagatttttatggagctgcaatgtctacacagagtctatt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgttttctatttcataagtcaagatttttatggagctgcaatgtctacacagagtctatt 412

                                                                       
Query: 124 aagtgaatgactatggtatagtcatgggtccctatttgtcctcctctatgtaattccctc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 aagtgaatgactatggtatagtcatgggtccctatttgtcctcctctatgtaattccctc 352

                                                                       
Query: 184 ttctgtacatgtcttgtgacagtgtgtttcttataccaaaagaaaaattatacataaagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ttctgtacatgtcttgtgacagtgtgtttcttataccaaaagaaaaattatacataaagt 292

                                                                       
Query: 244 gtaaagag-aacacacagcccaattcaagtctttgaaccactgttattattatgataatg 302
           |||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gtaaagagaaacacacggctcaattcaagtctttgaaccactgttattattatgataatg 232

                                                                       
Query: 303 tcagctgaaaagcactgtcagcttgcaagtgtgt------------------a----tga 340
           |||| |||||||||||||||||||||||||||||                  |    |||
Sbjct: 231 tcagttgaaaagcactgtcagcttgcaagtgtgtgtgaatgtgtgtgaatgcatgtgtga 172

                                                                       
Query: 341 a------------tgtgtgtgaatgtacgtgtgtatgtgtatgtgtgtgcaaataaatgt 388
           |            |||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 171 atgtgtgtgtatgtgtgtgtgaatgtatgtgtgtatgtatatgtgtgtgcaaataaatgt 112

                                                                       
Query: 389 g----------------tgtgtgtgtgaatgcatgtgtgaatgtgtgtgtatgggtgtgt 432
           |                ||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 111 gtatgtgtgtgaatatatgtgtgtgtgaatgcatgtgtgaa--tgtgtgtatgggtgtgt 54

                                       
Query: 433 gaatgtaagtatgtatgtaaatgtatgt 460
           |||| |  ||||||||||||||||||||
Sbjct: 53  gaatttttgtatgtatgtaaatgtatgt 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 861
Length adjustment: 10
Effective length of query: 450
Effective length of database: 851
Effective search space:   382950
Effective search space used:   382950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)